PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38186.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 490aa    MW: 54950.8 Da    PI: 5.2062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38186.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.3e-21294344256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  KHN38186.1 294 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 344
                 59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-34293353No hitNo description
SuperFamilySSF541712.03E-23294352IPR016177DNA-binding domain
SMARTSM003801.5E-39294357IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32294352IPR001471AP2/ERF domain
PROSITE profilePS5103223.235294351IPR001471AP2/ERF domain
PRINTSPR003675.9E-11295306IPR001471AP2/ERF domain
PfamPF008471.9E-14295344IPR001471AP2/ERF domain
PRINTSPR003675.9E-11317333IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGSNDSFGDR IFKTRSHLAD VTNRPAKRPF SLVSGDGGDL QFTKLIRLGV ENLAKEKNQM  60
QFGAQAHLNN VVLLQPKEKH PILLPFSDSH SFQDPIFLKE GMEEHNTLDL ENFKFGEKGE  120
GIVATDSAVE SGGKVICDVE NLGSPKRGTE QMPTISASND SNFLGLKPCS SSVTEAADVK  180
SCTCSFCSKA AYIWSDLHYQ DAKGRLSAIK KSQKEAKMII QKFSGLEDTI MHDQHRSEES  240
LKLEFSLVHQ WKSLFLEIQN MYTQESSQLE SSFETLKILR EAKPTCTAAK PTKLYRGVRQ  300
RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDNAAFK LRGEFARLNF PHLRHHGAFV  360
FGEFGDYRPL PSSVDSKLQA ICESLAKQEE KPCCSVEDVK PVIHAAELAE VESDVAKLNA  420
EYVYPEFEDF KVENENPMLS SSVSGESSSP ESGVTFLDFS DFSDSNNQWD EMENFGLEKF  480
PSVEIDWAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21293351160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2966510.0AY296651.1 Glycine max DREB2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233141.10.0uncharacterized protein LOC114413127 isoform X1
TrEMBLA0A445KPZ30.0A0A445KPZ3_GLYSO; Uncharacterized protein
STRINGGLYMA05G31380.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-51related to AP2 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]