PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38124.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 802aa    MW: 91705.8 Da    PI: 7.4694
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38124.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.57e-161185190
        FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                +f+++YA++vGFs+ + + ++ k +g i++ +f Cs+e +++++               ++C+a+l+v+++ dg+w vtk++++HnH+la
  KHN38124.1 11 SFFDAYARHVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNI--------------VSCNAMLRVERK-DGNWIVTKFVEDHNHSLA 85
                59**************************************99865..............55*********9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-131185IPR004330FAR1 DNA binding domain
PfamPF105517.4E-31215307IPR018289MULE transposase domain
PfamPF044341.8E-11480526IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.338492528IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-8503530IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MLFESEDAAK SFFDAYARHV GFSTHVGQFS RAKPDGPIIT WDFACSREVF KRKNIVSCNA  60
MLRVERKDGN WIVTKFVEDH NHSLASSRKV QNLQPGRHFV GAARNVTTET FDARNESYVS  120
VNGNHLEPIG SVRSSSLAEK CHPMRNIESL TYARSSRKRT LGRDAQNLLN YFKKMQGENP  180
GFYYAIQLDD ENRMTNVFWA DARSRTAYNY FGDAVIFDTM YRPNQYQVPF APFTGFNHHG  240
QMVIFGCALL LDESESSFTW LFKTWLSAMN DRPPVSITTD QDRAIQAAVA HVFPETRHCI  300
CKWHILREGQ ERLAHIYLAH PSFYGDLYSC INFSETTEDF ESTWKSLLDK YDLQKNDWLQ  360
AVYNARKQWA PVYFHDTFFA AITSNHGVSS FFDGYVNQQT TISLFFRQYE RSLEHSLEKE  420
IEADYETVCN TPVLKTPSPM EQQAANMYTK KIFAKFQEEL VETFAYTANN VEDDGVISKY  480
RVAKYEYDHK AYMVTLNISE MKANCSCQMF EYSGILCRHI LTVFTVTNVL TLPSHYILKR  540
WTTNAKSDIR TYEKITDPLD IENLTVRFNS LCREAIKLAE EGAIAVETYN ATMNALREGA  600
KRVGIMKKNV AKVTPPNTHG NGSCLEDNSK KRPSSISDVI PSLWPWQDSV PHHFNLNDLG  660
LPVTDLNTPS MAPVSIHRDG GPLDNTVVLT CFKSMTWMIE NKNSSSSSKI AVINMKLQDY  720
GKGPLGETEV QFRVTRVTLE PMLRSMTYIN QQLNAPVNRV AIINLRLQDT KTTTGQTEVK  780
FQVSRDTLGS MLRSMAYIQE QL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38124.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530369.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_014634675.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_014634676.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_028244784.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028244785.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028244786.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028244787.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028244788.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A445JIP10.0A0A445JIP1_GLYSO; Protein FAR1-RELATED SEQUENCE 3 isoform A
TrEMBLK7L8840.0K7L884_SOYBN; Uncharacterized protein
STRINGGLYMA08G24400.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]