PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN38074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 300aa MW: 32997.5 Da PI: 6.6752 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.1 | 1.8e-16 | 226 | 261 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg KHN38074.1 226 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKG 261 *****99999**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.8E-11 | 82 | 117 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.532 | 82 | 117 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-12 | 87 | 116 | IPR010399 | Tify domain |
Pfam | PF06203 | 2.8E-15 | 150 | 192 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.927 | 150 | 192 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.526 | 220 | 279 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.4E-13 | 220 | 273 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-12 | 221 | 273 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.5E-16 | 224 | 267 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.10E-14 | 225 | 281 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 226 | 253 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.1E-14 | 226 | 261 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDGIHGGDSR IHITDGQHPI HVPYVQEHEH HGLHHISNGN GIDDDHNDGG DTNCGGSESM 60 EGEVPSNHGN LPDNHAVMMD QGGDSGDQLT LSFQGQVYVF DSVSPEKVQA VLLLLGGREI 120 PPTMPAMPVS PNHNNRGYTG TPQKFSVPQR LASLIRFREK RKERNYDKKI RYTVRKEVAL 180 RMQRNKGQFT SSKSNNDESA SNATNWGMDE NWTADNSGSQ QQDIVCRHCG ISEKSTPMMR 240 RGPEGPRTLC NACGLMWANK GILRDLSRAA PLSGTIKNEN KSLEANQIVH RVAGEADDSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN38074.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-125 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014634654.1 | 0.0 | GATA transcription factor 28 isoform X2 | ||||
Refseq | XP_028244717.1 | 0.0 | GATA transcription factor 28-like isoform X2 | ||||
Swissprot | Q8H1G0 | 1e-131 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A0R0IVL6 | 0.0 | A0A0R0IVL6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JID0 | 0.0 | A0A445JID0_GLYSO; GATA transcription factor 28 isoform D | ||||
TrEMBL | A0A445JIJ1 | 0.0 | A0A445JIJ1_GLYSO; GATA transcription factor 28 isoform A | ||||
STRING | GLYMA08G23720.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13651 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-125 | ZIM-LIKE 2 |
Publications ? help Back to Top | |||
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