PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN38012.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 213aa MW: 23776.7 Da PI: 4.4916

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN38012.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.9	2.8e-06	45	85	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++R +++ ++f L +P kK +K +iL A Y+k+Lq KHN38012.1 45 KKRQRELTERFLALSATIPGF-----KKTDKTSILANASSYVKQLQ 85 89****************8.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.22	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-6	42	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-11	45	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-10	45	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.51E-6	45	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEESGENWPS DSYLDDFVND DLGFDDEEFG SEDDSFSGMG ETDRKKRQRE LTERFLALSA 60 TIPGFKKTDK TSILANASSY VKQLQQRVRE LEQLQEVQSN VTSNEGATSS CEVNSSSNDY 120 YCGGGGPNEI LPEVKVRVLQ KEVLIIIHCE KHKGIMLKIL SQLENVNLSI VNSSVLRFGK 180 STLDITIVAQ MGEGYKMTVD ELVKTLRVAI LTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN38012.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091863	0.0	BT091863.1 Soybean clone JCVI-FLGm-9A19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028245934.1	1e-156	transcription factor NAI1-like
TrEMBL	A0A445JI44	1e-155	A0A445JI44_GLYSO; Transcription factor bHLH19
STRING	GLYMA08G23020.1	1e-155	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14605	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	8e-30	bHLH family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]