PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37845.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 542aa    MW: 62306 Da    PI: 6.5127
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37845.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.15.7e-29121206187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l L+e+r+++++++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  KHN37845.1 121 RWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 206
                 8*************************************7778*****************************8..55667*******85 PP
2trihelix47.35.2e-15450524171
    trihelix   1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                 rWt+ e+  Li++r++ e+r+r+++    l+ +lW+e+++k++  gf rs+ +Ck+ w++++   +++ +   ++
  KHN37845.1 450 RWTEMEISNLIQLRTSFEQRFRENNngylLENGLWDEIAAKLACLGFDRSARECKQIWDEISISLRRTVDECDDG 524
                 8**********************977888*********************************9999998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6118181IPR001005SANT/Myb domain
PROSITE profilePS500906.888120179IPR017877Myb-like domain
PfamPF138371.5E-19120207No hitNo description
CDDcd122035.22E-22120186No hitNo description
PROSITE profilePS500906.992443511IPR017877Myb-like domain
SMARTSM007170.12447513IPR001005SANT/Myb domain
PfamPF138372.3E-9449526No hitNo description
CDDcd122038.90E-15449517No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGDPYGLPED LRRLIPARST HLNPSNTHLL EPLCLHHGLS SAVSSATTPH TSFDPNMVGD  60
VFFPRGFTHH FAHHHDYSSS SGVNPVVTAT AAATTTVSDH AFCSMESAEK GWFGFDSGNN  120
RWPRQETLSL LEIRSRLDSK FRENNQKAPL WNEISRIMAE EFGYQRSGKK CKEKFENLYK  180
YYKKTKEGKA SRQDGKHYRF FRQLEAICGD QANNAHHAHA STSDKTHRAG GNTVTTNQNQ  240
TCTINQDYNN GNNSNNNPKC SECLSISNSS EFETSSSENN DEDLSAIAFM MKQQSRDEKQ  300
KGLDDHIHRQ NDQYRRVRKS WRAKVEEIVD SHMRKIIETQ DAWMERMLSV VEQREQEMAS  360
REEERKRKES MWLDKQVHEL WAKEKAWVEA RDAALIEVVR KHIGIGIGLE ALPLVEEEPP  420
NKNKSQGNYN IDANEFPSEG VDHNRSSSSR WTEMEISNLI QLRTSFEQRF RENNNGYLLE  480
NGLWDEIAAK LACLGFDRSA RECKQIWDEI SISLRRTVDE CDDGAKRRPW YLGLKLTDDD  540
DL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37845.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941220.0BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535498.20.0trihelix transcription factor PTL
RefseqXP_028183676.10.0trihelix transcription factor PTL-like
TrEMBLA0A0R0HW960.0A0A0R0HW96_SOYBN; Uncharacterized protein
STRINGGLYMA10G34610.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-46Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]