PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN37819.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 353aa MW: 39390.1 Da PI: 6.7493

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN37819.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	162	208	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L KHN37819.1 162 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 208 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.6E-12	162	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-15	163	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-14	163	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.32E-5	172	211	No hit	No description
CDD	cd04873	2.43E-6	245	291	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MIQEDQGQCS SQAINNYHQA YQEQLLLQQQ MQQQQQNNDI FGGGGGLNMY PGAEVSPIMN 60 HHHQPWSMTM PHHHHHHQVH DPFLVPPQPS PYASLFNRRG PSLHQFAYDH HGSSSDHLRI 120 ISESLVGPVV QPGSAVPFGL QTELAKMTAQ EIMEAKALAA SKSHSEAERR RRERINNHLA 180 KLRSLLPSTT KTDKASLLAE VIQHVKELKR QTSVIAETSP VPTEADELTV VDEADEDGNS 240 VIKASLCCED RSDLFPELIK TLKALRLRTL KAEITTLGGR VKNVLFITGE EADSSSGSTE 300 DHSHHHHQQQ QQQYCINSIQ EALKAVMEKS VGDHHESASA NIKRQRTNII SMS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MIQEDQGQCS SQAINNYHQA YQEQLLLQQQ MQQQQQNNDI FGGGGGLNMY PGAEVSPIMN  60
HHHQPWSMTM PHHHHHHQVH DPFLVPPQPS PYASLFNRRG PSLHQFAYDH HGSSSDHLRI  120
ISESLVGPVV QPGSAVPFGL QTELAKMTAQ EIMEAKALAA SKSHSEAERR RRERINNHLA  180
KLRSLLPSTT KTDKASLLAE VIQHVKELKR QTSVIAETSP VPTEADELTV VDEADEDGNS  240
VIKASLCCED RSDLFPELIK TLKALRLRTL KAEITTLGGR VKNVLFITGE EADSSSGSTE  300
DHSHHHHQQQ QQQYCINSIQ EALKAVMEKS VGDHHESASA NIKRQRTNII SMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	172	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN37819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ083663	0.0	JQ083663.1 Glycine max cultivar Tamba bHLH mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536319.1	0.0	transcription factor bHLH30
Refseq	XP_006589385.1	0.0	transcription factor bHLH30
Refseq	XP_028182792.1	0.0	transcription factor bHLH30-like
Refseq	XP_028182793.1	0.0	transcription factor bHLH30-like
Swissprot	Q9S7Y1	3e-99	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A445IQ55	0.0	A0A445IQ55_GLYSO; Transcription factor bHLH30
TrEMBL	H2EUM8	0.0	H2EUM8_SOYBN; BHLH (Fragment)
STRING	GLYMA10G34910.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-82	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]