PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37669.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 319aa    MW: 34160.9 Da    PI: 8.0081
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37669.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702173.21.3e-531222787154
      DUF702   7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklssaeskkelet 102
                  CqdCGn+ak+dC+++RCRtCCk rgfdC+thvkstWvpa+ rr      +        ++++ askr r+l   k+ ++sa+s++++s+a+++k+++t
  KHN37669.1 122 VCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRGGGGDSS----GGDGNSDAGASKRLRTLgssKNVAASATSHSSTSNATPTKSFDT 216
                 7*******************************************9643333....33334445555555555333566788889999999999999999 PP

      DUF702 103 ss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 ss          lP++v+++avfrc rvs++  ge+e+ Y ++v+i+GhvfkG+Lyd+G+++
  KHN37669.1 217 SScqqdagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADA 278
                 999999*****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016235.6E-25122164IPR006510Zinc finger, lateral root primordium type 1
PfamPF051424.5E-51122277IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016243.0E-21229275IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNMLGLRDLV FIAPTPSQLH HHQQHQPISA EHHSNLPLPS QASLSVGLGI FPLLTVPHTN  60
DVQVQVQDCA NNNTNTNTNY WNLKMCGATE VNSTRKGVMN MEDEGSNKQM MESEEGGGEF  120
RVCQDCGNRA KRDCSFRRCR TCCKGRGFDC STHVKSTWVP ASMRRGGGGD SSGGDGNSDA  180
GASKRLRTLG SSKNVAASAT SHSSTSNATP TKSFDTSSCQ QDAGFKQSLP RHVRAPAVFR  240
CHRVSAIGSG EDEIVYMATV HISGHVFKGF LYDHGADARN DVPSVSELQL GNNGSGKNNN  300
RECSSAIGVP TSAYPASVC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973460.0BT097346.1 Soybean clone JCVI-FLGm-16G15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187926.10.0protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A445I7J40.0A0A445I7J4_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A
STRINGGLYMA13G26730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-48Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]