PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN37611.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 342aa MW: 38313 Da PI: 7.8798

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN37611.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	7.9e-07	181	200	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ KHN37611.1 181 FPCPVCSKTFNRYNNLQMHM 200 89*****************9 PP
2	zf-C2H2	15.5	5.1e-05	265	287	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk F k + ++H +++ KHN37611.1 265 YMCRKCGKAFAVKGDWRTHEKNC 287 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.15E-6	177	203	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-6	181	200	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.034	181	203	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.8E-5	181	200	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.616	181	208	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	183	203	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.79E-7	249	285	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-6	261	285	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	40	265	285	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.974	265	285	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MLLHPHYSSS SQSNYPLANN YSNNNRFGIQ LQQGAPSSSS SSSSFYAAPP SSPPLRVALP 60 LINKISLKSS EQHQQNETSS NVLEEKEEDE KKVDNNNKHH ESGEDADEET VTVALHIGLP 120 RMDTSSSSDL GPPKVVSTTC MEIGEKGEVN MISEHPLDHR LNKGQYWIPT PSQILIGPTQ 180 FPCPVCSKTF NRYNNLQMHM WGHGSQYRKG PDSLKGTQPT AMLRLPCFCC APGCKHNIDH 240 PRARPLKDFR TLQTHYKRKH GIKPYMCRKC GKAFAVKGDW RTHEKNCGKI WYCLCGSDFK 300 HKRSLKDHIK AFGFGHGSFG IDCLQEEDEA ASDIEHDGES SM

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MLLHPHYSSS SQSNYPLANN YSNNNRFGIQ LQQGAPSSSS SSSSFYAAPP SSPPLRVALP  60
LINKISLKSS EQHQQNETSS NVLEEKEEDE KKVDNNNKHH ESGEDADEET VTVALHIGLP  120
RMDTSSSSDL GPPKVVSTTC MEIGEKGEVN MISEHPLDHR LNKGQYWIPT PSQILIGPTQ  180
FPCPVCSKTF NRYNNLQMHM WGHGSQYRKG PDSLKGTQPT AMLRLPCFCC APGCKHNIDH  240
PRARPLKDFR TLQTHYKRKH GIKPYMCRKC GKAFAVKGDW RTHEKNCGKI WYCLCGSDFK  300
HKRSLKDHIK AFGFGHGSFG IDCLQEEDEA ASDIEHDGES SM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN37611.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541613.1	0.0	zinc finger protein WIP2
Refseq	XP_028189063.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-118	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A445I7H8	0.0	A0A445I7H8_GLYSO; Zinc finger protein WIP2
TrEMBL	K7M0U9	0.0	K7M0U9_SOYBN; Uncharacterized protein
STRING	GLYMA13G27371.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-120	C2H2 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]