PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37548.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 762aa    MW: 88087.9 Da    PI: 7.7529
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37548.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.55.2e-1943117189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 k+Y +YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rt+C a ++v+++ +gkw+v++++++HnH+l
  KHN37548.1  43 KYYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLS--------------SRTDCPAFIRVQLNGSGKWVVDHFHKDHNHHL 117
                 69*************************************8765..............5899**************************99 PP
2FAR165.71.3e-20199274190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY++YA ++GF vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a l++k++ +gkw v++l+++HnH+l 
  KHN37548.1 199 QFYHAYAAHLGFGVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAYLRIKRQPSGKWIVDRLRKDHNHDLD 274
                 6***************************************999..............4899**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-1543117IPR004330FAR1 DNA binding domain
PfamPF031011.0E-16199274IPR004330FAR1 DNA binding domain
PfamPF105513.4E-27373466IPR018289MULE transposase domain
PROSITE profilePS5096610.361648684IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-8655681IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-6659686IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MIVKDHFVGT ELAMSNTCVE EGIDFSCDPY IGLEFDTADE ALKYYTSYAN RTGFKVRIGQ  60
LYRSRTDGSV SSRRFVCSKE GHQLSSRTDC PAFIRVQLNG SGKWVVDHFH KDHNHHLEIS  120
GENCTPTLQP KGAGATVINS LTEFPRRTRK KLLEEANDES SCPFGIIDFK RLRKEELEGQ  180
SRTEPYVGQE FSSPNEAYQF YHAYAAHLGF GVRIGQLFRS KNDGSITSRR FVCSKEGFQH  240
PSRVGCGAYL RIKRQPSGKW IVDRLRKDHN HDLDSEKVGR AKSLPASNIL AEEVDTGLLN  300
GDLFRIDNYP VPRGGRQNHI RSEWYGILLE YFQSRQAEDT GFFYAMEVDN GNCMNIFWAD  360
GRSRYSCSHF GDVLVLDTSY RKTVYLVPFA TFVGVNHHKQ PVLLGCALIA DESEESFTWL  420
FQTWLRAMSG RLPLTVIADQ DIAIQRAIAK VFPVTHHRFS LWQIKAKEQE NMGLMGNGFT  480
KDYEKCVYQS QTVDEFDATW NVLLNKYGLK DDAWLKEMYQ KRASWVPLYL KGTFFAGIPM  540
NESLDSFFGA LLNAQTPLME FIPRYERGLE RRREEERKED FNTSNFQPIL QTKEPVEEQC  600
RRLYTLTVFK IFQKELLQCF SYLGFKIFEE GGLSRYMVRR CGNDMEKHVV TFNASNLSIS  660
CSCQMFEYEG VLCRHVLRVF QILQLREVPS RYILHRWTRN AEDGVFPDME SWSSSQELKN  720
LMLWSLRETA SKYIDAGATS FEKYKLAFEI LREGGRKLCW HR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37548.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541641.10.0protein FAR1-RELATED SEQUENCE 7
RefseqXP_028190661.10.0protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A445I7V40.0A0A445I7V4_GLYSO; Protein FAR1-RELATED SEQUENCE 7
TrEMBLI1M1760.0I1M176_SOYBN; Uncharacterized protein
STRINGGLYMA13G28230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  3. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]