PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37527.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 772aa    MW: 86354.9 Da    PI: 7.0242
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37527.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP100.81.1e-31114185777
                 ---.--TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   7 Cea.dlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 C++  +se+k yhrrh+vC  +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k 
  KHN37527.1 114 CQVpAISELKGYHRRHRVCLRCANAATVMLNGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKP 185
                 4432589************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-22109171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.162111184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-28113186IPR004333Transcription factor, SBP-box
PfamPF031106.3E-23114184IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MEPLSLPPLP VMDDAEDPSS IWDFSYLLDF DLDDQDIIIN NNNSLPLPLN DHPAPSEIPQ  60
NDRVRKRDPR LTCSNFLAGR VPCACPELDA ILEDEGLPGK KRARTARASA SARCQVPAIS  120
ELKGYHRRHR VCLRCANAAT VMLNGEAKRY CQQCGKFHVL SDFDEGKRSC RRKLERHNTR  180
RRRKPTADSG GATHSELLQP VAENEENNYD VEAGKDCSNL STDINDVGVS LDLEDEPAPI  240
PSSAPEAQNI NSDSVVSLAV SGETRVNSGN TSNSPSYCDN KSAYSSMCQT GRISFKLYDW  300
NPAEFPRRLR HQIFQWLASM PVELEGYIRP GCTILTIFIA MPNIMWINLL KDPLEYVHDI  360
VAPGKMLSGR GTALVHLNDM IFRVMKDGTS VTNVKVNMHA PKLHYVHPTY FEAGKPMEFV  420
ACGSNLLQPK FRLLVSFSGK YLKCEYCVPS PHSWTEDNIS CAFDNQLYKI YVPHTEESLF  480
GPAFIEVENE SGLSNFIPVL IGDKKICTEM KTLQQKLDVS LLSKQFRSAS GGSICSSCET  540
FALSHTSSSD LLVDIAWLLK DTTSENFDRV MTASQIQRYC HLLDFLICND STIILGKILP  600
NLMILTESMK SNVVINRTSD VDIMQLLNHI HNARNAVYQK HPKSESIIVH SEMKGFILAQ  660
GCSQDNKLSV AINSQGIQSR ADEKWGVLKV KSPTSNEKME RIPLLKRDII MSMEELPERY  720
GRRCLGRGFL TFRPAIFVLV SVAVCLGVCV AVLHPGRVSE LAVSVRRCLF NY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-38112191486squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170182RRKLERHNTRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37527.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028189309.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A445I7Y80.0A0A445I7Y8_GLYSO; Squamosa promoter-binding-like protein 7
STRINGGLYMA13G28460.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]