PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37438.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 363aa    MW: 40473.3 Da    PI: 8.3366
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37438.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.45.9e-3383139259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkkkvers  +++v+ i+Y+geHnh+
  KHN37438.1  83 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCSVKKKVERSL-EGHVTAIIYKGEHNHQ 139
                 8****************************************.***************8 PP
2WRKY107.47.1e-34250308159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  KHN37438.1 250 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHD 308
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-2969141IPR003657WRKY domain
SuperFamilySSF1182909.68E-2680141IPR003657WRKY domain
SMARTSM007741.0E-3582140IPR003657WRKY domain
PROSITE profilePS5081123.16983141IPR003657WRKY domain
PfamPF031063.4E-2583139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37235310IPR003657WRKY domain
SuperFamilySSF1182904.71E-30242310IPR003657WRKY domain
PROSITE profilePS5081139.18245310IPR003657WRKY domain
SMARTSM007741.1E-39250309IPR003657WRKY domain
PfamPF031062.0E-26251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
SFGMTHQQAL TQVSAQASQA NSNMHIQAEH SLTQASAATF NTTQQLIPPL NADSWATMTE  60
TADHSHSEQR LQSSLLNVDK PADDGYNWRK YGQKQVKGSE FPRSYYKCTH PNCSVKKKVE  120
RSLEGHVTAI IYKGEHNHQR PHPNKRSKDT MTSNANSNIQ GSVDSTYQGT TTNSMSKMDP  180
ESSQATADHL SGTSESEEVG DHETEVDEKN VEPDPKRRKA EVSQSDPASS HRTVTEPRII  240
VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP RSYYKCTTQG CNVRKHVERA STDPKAVITT  300
YEGKHNHDVP AAKNNSHTMA SNTASQLKSH NTNPEKHNFG SRGMGGNEQQ PVARLRLKEE  360
QIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-4483311878Probable WRKY transcription factor 4
2lex_A4e-4483311878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37438.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195570.0EU019557.1 Glycine max WRKY9 (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028231215.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-132WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0B2RYD70.0A0A0B2RYD7_GLYSO; Putative WRKY transcription factor 4 (Fragment)
STRINGGLYMA01G06550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-135WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]