PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN37261.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 120aa MW: 13844.4 Da PI: 9.7396

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN37261.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.5e-09	54	99	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er+RR ri ++ +L++l+ + +k a++L +Av++Ik Lq KHN37261.1 54 SIAERQRRTRISGKLKKLQDLVSNM----DKQTCYADMLDLAVQHIKGLQ 99 689*******************7....577999************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.773	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.95E-14	51	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.88E-8	52	103	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-12	53	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-9	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	54	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MYLLDWTLLP PCILLRCLKA LESQFSLEKL LHIPRDSVPC KIRAKRGCAT HPRSIAERQR 60 RTRISGKLKK LQDLVSNMDK QTCYADMLDL AVQHIKGLQT QLQNLHRELE NCTCGCKQSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN37261.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028183041.1	1e-83	transcription factor bHLH128-like
Swissprot	Q8H102	2e-51	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A445IUM9	3e-82	A0A445IUM9_GLYSO; Transcription factor bHLH128
STRING	XP_007142611.1	2e-59	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]