PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN37224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 31525.3 Da PI: 4.5529 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.8e-18 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa +l+g KHN37224.1 39 LYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALYCLRG 88 59****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-27 | 38 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-28 | 39 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-30 | 39 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-20 | 39 | 96 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.759 | 39 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 40 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-9 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-9 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MENNNHHAMA AGASSDSNTS DHTTPISSSC VNDNNNNKLY KGVRKRKWGK WVSEIRLPNS 60 RERIWLGSYD SPEKAARAFD AALYCLRGRH ANFNFPNTPC NMDTATNAPP NQSLTPQEIQ 120 EVAAKFANQV SPLLQKPQEQ PQPQRSSDGG GGGANSSSFG SKLLCKSDSI AESSTTSTTT 180 NCTPTTTASS CSATMYECDG TEQVDRGDMM DWTFLNVFDF SNEVVLPAVG SDYNDLYNSE 240 LHKMHSDSGE LLYSTPFEGY EQLIEADHDD DDPFSHQSFL WNWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 40 | 106 | 15 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 46 | KGVRKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00601 | PBM | Transfer from AT1G74930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN37224.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-82 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527767.1 | 0.0 | ethylene-responsive transcription factor TINY | ||||
Refseq | XP_028235117.1 | 0.0 | ethylene-responsive transcription factor TINY-like | ||||
TrEMBL | A0A0B2RYF7 | 0.0 | A0A0B2RYF7_GLYSO; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A0R4J3G7 | 0.0 | A0A0R4J3G7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G06101.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 3e-42 | ERF family protein |
Publications ? help Back to Top | |||
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