PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37129.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 387aa    MW: 42144.7 Da    PI: 8.7764
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37129.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.2e-14103162155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  KHN37129.1 103 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 162
                 57*******************666664478446**********99*************98 PP
2AP249.61e-15206256255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  KHN37129.1 206 AYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 256
                 69***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-11103162IPR001471AP2/ERF domain
CDDcd000181.50E-21103172No hitNo description
SuperFamilySSF541711.9E-17103172IPR016177DNA-binding domain
SMARTSM003802.8E-28104176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-16104171IPR001471AP2/ERF domain
PROSITE profilePS5103219.137104170IPR001471AP2/ERF domain
PRINTSPR003674.6E-7105116IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-18205266IPR016177DNA-binding domain
CDDcd000185.84E-24205266No hitNo description
PROSITE profilePS5103219.296206264IPR001471AP2/ERF domain
SMARTSM003802.5E-32206270IPR001471AP2/ERF domain
PfamPF008475.4E-10206256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-19206265IPR001471AP2/ERF domain
PRINTSPR003674.6E-7246266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEDFYFGDHQ QDLKAMIVPG FKALSGTNSG SEVDDSTSNK TVTRVAPAAL GGAHSGESNC  60
KGSALTLCDV AANGSDDSNN KAVVAVGFDT RKKVAHTFGQ RTSIYRGVTR HRWTGRYEAH  120
LWDNSCRREG QARKGRQVYL GGYDKEDKAA RAYDLAALKY WGPTATTNFP ISNYTKELEE  180
MEHAGRQEFI ASLRRKSSGF SRGASAYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFSTE  240
EEAAEAYDIA AIKFRGSSAV TNFEMSRYDV DTILNNSLPV GGVAKRLKVS PETENKALIS  300
TIIQPPQNTN ASSSINFSAI QPVSSIPYDS AITCYPHNFF HHHFNPTNGG TSSSDSAAAA  360
AVTDAIALNT LPPPAVPGFF IWPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352041e-134AC235204.1 Glycine max strain Williams 82 clone GM_WBb0017J04, complete sequence.
GenBankAC2353911e-134AC235391.1 Glycine max strain Williams 82 clone GM_WBb0116P03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246595.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X2
RefseqXP_028246596.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X2
SwissprotQ6J9N81e-126AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A445JL140.0A0A445JL14_GLYSO; AP2-like ethylene-responsive transcription factor AIL7 isoform C
STRINGGLYMA08G38190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-121AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]