PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37033.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 288aa    MW: 31840.9 Da    PI: 9.4856
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37033.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.41.9e-18155188134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+t++TplWR+gp g+k+LCnaCG+++rk +
  KHN37033.1 155 CSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKAR 188
                 *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-16149200IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.072149185IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12149189No hitNo description
Gene3DG3DSA:3.30.50.104.3E-15153188IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.29E-13154191No hitNo description
PROSITE patternPS003440155180IPR000679Zinc finger, GATA-type
PfamPF003202.5E-16155188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTPYSLNPPG PSIQAGQTQL FNISPNNQDC RTIFNIFDDD KMMVLHDGSS SNSNKSSFNN  60
NISPEPVVVM VDPIISSACD QQHNLPYEEE SKNIDDHGSG NKWMSSKMRL MKKMMRPSMS  120
PTTDKAINSG LESSSSRYSQ RSLCNNNASS TTRVCSDCNT STTPLWRSGP KGPKSLCNAC  180
GIRQRKARRA MTKATSGLIT PITCAKTRVH NKEKKSRANH FAQFKNKYKS TTTTSAGSSE  240
GVRKLEYLKD FAISLRSNNS DFEQGFPRDE VAEAALLLMD LSCGFVHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601232.10.0putative GATA transcription factor 22
RefseqXP_028209837.10.0putative GATA transcription factor 22
TrEMBLA0A445GAN80.0A0A445GAN8_GLYSO; Putative GATA transcription factor 22
TrEMBLI1MXA90.0I1MXA9_SOYBN; Uncharacterized protein
STRINGGLYMA17G34670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-18GATA transcription factor 16
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]