PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36988.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 608aa    MW: 66810.4 Da    PI: 7.2024
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36988.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24224268145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  KHN36988.1 224 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 268
                 79****************************************985 PP
2QLQ62.31.3e-21154190137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 ++FT++Q+++L++Q+l+yKy+ an+PvP +Ll +i+k
  KHN36988.1 154 GPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRK 190
                 59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-12154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.473155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.3E-16155189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847224268IPR014977WRC domain
PfamPF088791.2E-20225267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDLGVVGLEG VVGSESGCVF GSSLASDPET KHKWYGSGLL KQERSAIATE DDEWRISKVA  60
KTDHDMSSAS KAMFFQQRNN SLLRSNNATL FSDGHHQSQM LNFSSPKSET LLVDKAFSNA  120
TLPFSYHQLS SYSRNTGYNS GSISMHGALA SVRGPFTPSQ WMELEHQALI YKYITANVPV  180
PTHLLIPIRK ALDSVGFCNF SSGLLRSNSL GWGGFHLGFS NSTDPEPGRC RRTDGKKWRC  240
SRDAVVDQKY CERHMNRGRH RSRKPVEGQS GHALTTTNTP NASSNSTVVP GNHNNNTFAH  300
INVHHPLPPH SSPANTINRM FMSNNKENNN TSERMKDGLA LPMLPPTLEL KPKDNNNSFM  360
VHKHQEPYDE SSRNKNEFGL VTSDSLLNPS QKRSFDSSSS SQKDDSSESQ QQHSLRHFID  420
DSPKPQSHHN HNHRSSSSIW PELDNMQSDR TQLSISIPIS SSDHFMSFAT SSPSNEKLTL  480
SPLRLSREFD PIQMGLGVGS ASNEANTRQA NWIPITWESS MGGPLGEVLN LSNNNNNSNA  540
SDQCGKNNNN TSALNLMKDD DDDDGWDNSP PPIGSSPTGV LQKTAFGSLS NSSAGSSPRG  600
APENNNKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210762.10.0growth-regulating factor 1-like
TrEMBLA0A445GAW60.0A0A445GAW6_GLYSO; Growth-regulating factor 6
STRINGGLYMA17G35100.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-90growth-regulating factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]