PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN36843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 180aa MW: 20304.6 Da PI: 8.7055 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 97.3 | 1.3e-30 | 66 | 135 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e C adl+ ak+yhrrhkvCe hskap+v+v+gl+qr fhel efDe+krsCrrrLa+hnerrrk++a KHN36843.1 66 CQAEICGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQR-------FHELAEFDEAKRSCRRRLARHNERRRKSNA 135 **************************************97.......7**************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-25 | 58 | 120 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.487 | 63 | 133 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.5E-29 | 64 | 137 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-21 | 66 | 132 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MEIKSGERRQ VSIEKVRRDN TVEVEDEEEE DESVVGGEGG LAEDERKKIG GGSGRRGSSG 60 VSPPSCQAEI CGADLTVAKR YHRRHKVCEL HSKAPSVMVA GLRQRFHELA EFDEAKRSCR 120 RRLARHNERR RKSNAETCNE GCSGSKGQHP AETHCRNTDD WGRIQMNIAK NSGYKFFHIR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-26 | 54 | 132 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN36843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT098928 | 1e-175 | BT098928.1 Soybean clone JCVI-FLGm-16D18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543233.1 | 1e-105 | squamosa promoter-binding protein 1 | ||||
Refseq | XP_028190356.1 | 1e-105 | squamosa promoter-binding protein 1-like | ||||
Swissprot | Q38741 | 5e-31 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
Swissprot | Q9S7P5 | 7e-28 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A445IB34 | 1e-104 | A0A445IB34_GLYSO; Squamosa promoter-binding protein 1 | ||||
TrEMBL | I1M360 | 1e-104 | I1M360_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G35000.1 | 1e-105 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53160.2 | 1e-20 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|