PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN36754.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 460aa MW: 50714.7 Da PI: 6.5313

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN36754.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	351	389	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L KHN36754.1 351 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 389 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.481	340	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.40E-7	350	393	No hit	No description
SuperFamily	SSF47459	1.7E-11	350	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0025	351	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-10	354	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MADNDQFQAS GNWWETARSV RYESGASQSS SSAITNIGNN FGWQQGSDMA DMKPRSSMDS 60 SSVVFHDTQN NKLQQPDSAT STDPNLHMMG LGLSSQTMDW NQASLLRGEK GTENSFRSML 120 QENLSSSRTN FQQETGNMGL SQQVQWRSEK MFSSESSTNE FKQVNNRGGG GFSLDQSQFS 180 PQYSSGDSTV TSQGLPSSNF QIDSSALYGT PSILQGLLGP DHNNQPQQQQ PMSFPYQTTS 240 YGLNSNELVP SWSKVPQFLR ASPPKQPPNN QLHFTNNATF WNDSEAANNK DVRPSFFPSL 300 QPPFSTPNFE VQSKNISEVR ESGTVVKKSG NEPAPKRTRN ESPSPLPAFK VRKEKMGDRI 360 TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQVTALSTPY MKSGAPMQIQ QNSGKSKEAE 420 GPKQDLRSRG LCLVPVSSTF PVTHETTVDF WTPTFGGTSR

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MADNDQFQAS GNWWETARSV RYESGASQSS SSAITNIGNN FGWQQGSDMA DMKPRSSMDS  60
SSVVFHDTQN NKLQQPDSAT STDPNLHMMG LGLSSQTMDW NQASLLRGEK GTENSFRSML  120
QENLSSSRTN FQQETGNMGL SQQVQWRSEK MFSSESSTNE FKQVNNRGGG GFSLDQSQFS  180
PQYSSGDSTV TSQGLPSSNF QIDSSALYGT PSILQGLLGP DHNNQPQQQQ PMSFPYQTTS  240
YGLNSNELVP SWSKVPQFLR ASPPKQPPNN QLHFTNNATF WNDSEAANNK DVRPSFFPSL  300
QPPFSTPNFE VQSKNISEVR ESGTVVKKSG NEPAPKRTRN ESPSPLPAFK VRKEKMGDRI  360
TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQVTALSTPY MKSGAPMQIQ QNSGKSKEAE  420
GPKQDLRSRG LCLVPVSSTF PVTHETTVDF WTPTFGGTSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN36754.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-174	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541866.1	0.0	transcription factor bHLH123
Refseq	XP_028191867.1	0.0	transcription factor bHLH123-like isoform X1
Refseq	XP_028191868.1	0.0	transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	6e-92	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A445IB97	0.0	A0A445IB97_GLYSO; Transcription factor bHLH123 isoform A
TrEMBL	K7M2F9	0.0	K7M2F9_SOYBN; Uncharacterized protein
STRING	GLYMA13G36010.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	6e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]