PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36691.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 249aa    MW: 27673.8 Da    PI: 7.9071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36691.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-1463109354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN  +++Lr+++P a     kKl+Ka+ L ++++++k+L
  KHN36691.1  63 KNHSEAERRRRARINAHLDTLRSVIPGA-----KKLDKATLLGEVIRHLKEL 109
                 58*************************9.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.41860109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1363111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1163109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1464115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-473111No hitNo description
Gene3DG3DSA:3.30.70.2607.1E-5148190No hitNo description
CDDcd048732.13E-7148219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEMEAFAPHR ISDGFPVCCG VIGSGYGSSS SLVLDKEKGE LVEAPVKLER KGVSPERSIE  60
ALKNHSEAER RRRARINAHL DTLRSVIPGA KKLDKATLLG EVIRHLKELK TNATQASEGL  120
MIPKDSDEIR VEEQEGGLNG FPYSIKASLC CEYKPGLLTD IRQALDALHL MIIRAEIATL  180
GGRMNSVFVI ISCKEQNIED PEYRQFLAGS VHQALRSVLD RFSVSQDMLE SRKRRRISIF  240
SSSSIGDFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231235RKRRR
2232236KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541890.20.0transcription factor bHLH30
RefseqXP_028187680.10.0transcription factor bHLH30-like
TrEMBLA0A445IC130.0A0A445IC13_GLYSO; Transcription factor bHLH30 isoform A
TrEMBLK7M2J70.0K7M2J7_SOYBN; Uncharacterized protein
STRINGGLYMA13G36741.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-30bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]