PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 154aa MW: 16936.8 Da PI: 9.9497 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 42 | 2.5e-13 | 77 | 105 | 49 | 77 |
EEETTT--SS--S-STTTT-------S-- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77 fhel efD++krsCrr La++nerrrk++ KHN36651.1 77 FHELAEFDDTKRSCRRSLAGYNERRRKNS 105 ***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 9.545 | 19 | 104 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.75E-9 | 76 | 107 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.1E-8 | 77 | 103 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 0.001 | 77 | 91 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEGLGSKMVV RSDRLKRDVA DCGDNNQNGY VEQEKKIKGV VSCAGKKGGG GNNNSIYAVL 60 STPIFMRPSS TTGGTGFHEL AEFDDTKRSC RRSLAGYNER RRKNSDQSQA EGSSRNKGTG 120 HPQLKDITCG QADERGRIQI TIHENAAYKH FQIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36651.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028186632.1 | 5e-73 | squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A445IBQ9 | 1e-110 | A0A445IBQ9_GLYSO; Squamosa promoter-binding-like protein 4 | ||||
STRING | GLYMA13G37130.1 | 1e-70 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 4e-14 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
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