PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36624.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 414aa    MW: 46573.9 Da    PI: 6.3043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36624.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18219269256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + k +ge
  KHN36624.1 219 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKQRGE 269
                 59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-31218278No hitNo description
Gene3DG3DSA:3.30.730.102.5E-31219277IPR001471AP2/ERF domain
PROSITE profilePS5103222.392219276IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22219277IPR016177DNA-binding domain
SMARTSM003806.9E-38219282IPR001471AP2/ERF domain
PRINTSPR003676.9E-11220231IPR001471AP2/ERF domain
PfamPF008471.2E-11220269IPR001471AP2/ERF domain
PRINTSPR003676.9E-11242258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAAANSGKFD VGDETHKNSR KGSESQDWEI EKGKGVDCSS SQRRQWKPVF DDASISYNRP  60
LKKIRSPDRQ ETNQSSSSSS STTPFEPSPL SNPPPSSSRI VFPFAFDGSQ HPMQFPHQFG  120
TTTNSPFPHP SFQNQQHQMI SFGSSQQHNN LAYPPIIARD SSSLVHHHHQ QQQQQHQQQL  180
LQYWSGALNL SPRGMLTRLG PDGRPLFSPP TQRINTTKLY RGVRQRHWGK WVAEIRLPRN  240
RTRLWLGTFD TAEDAAMAYD REAFKQRGEN ARLNFPELFF NKDKKEQGEE EASSPVLSAI  300
APAHHRDVTI EESNENDSGD ATVSDEVHAP AATASSEGVS QELVWGEMSA WFNAIPAAWG  360
PGSPMWDDLD ATNNLLCQSH IPFSNPNQQQ FNDADDAQRQ EQNTGPGYLW KDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20218276160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8227370.0FR822737.1 Glycine max cv. Xanhtiendai partial mRNA for drought responsive element binding protein 5 (DREB5 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187040.10.0ethylene-responsive transcription factor ERF053-like
TrEMBLA0A445IBV70.0A0A445IBV7_GLYSO; Ethylene-responsive transcription factor ERF053
STRINGGLYMA13G37451.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-56ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]