PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 20900.2 Da PI: 8.2085 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8.2e-18 | 63 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p ng r +lg+f ta +Aa a+++a+++++g KHN36573.1 63 CNYRGVRQRT-WGKWVAEIREP--NG-GNRLWLGTFPTAIGAALACDEAARAMYG 113 56*****999.**********9..33.49***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-12 | 63 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.27E-29 | 63 | 122 | No hit | No description |
PROSITE profile | PS51032 | 20.126 | 64 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-19 | 64 | 121 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.0E-35 | 64 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 64 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-9 | 65 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-9 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MLAKAHNKGD GSKSLAKILA KWKEYNAQID SSSDADKPIR KVPAKGSKKG CMKGKGGPEN 60 SRCNYRGVRQ RTWGKWVAEI REPNGGNRLW LGTFPTAIGA ALACDEAARA MYGSCARLNF 120 PNVSVSSFSE ESSKDSPSAN HCGSSMAVSA NESMISPSNS GVDAEEDVDM EPISLSLSVK 180 HENGEGESGI SSSPPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-17 | 64 | 121 | 5 | 63 | ATERF1 |
3gcc_A | 6e-17 | 64 | 121 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36573.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089389 | 0.0 | BT089389.1 Soybean clone JCVI-FLGm-1H20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235466.1 | 1e-140 | dehydration-responsive element-binding protein | ||||
Refseq | XP_028186923.1 | 1e-140 | putative dehydration-responsive element-binding protein 2H | ||||
Swissprot | Q8LFR2 | 2e-49 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A445ICM8 | 1e-139 | A0A445ICM8_GLYSO; Dehydration-responsive element-binding protein 2A isoform A | ||||
TrEMBL | C6SW46 | 1e-139 | C6SW46_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G38030.1 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 4e-38 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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