PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN36240.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 375aa MW: 40893.4 Da PI: 6.0022

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN36240.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.6	7e-16	148	194	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq KHN36240.1 148 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 194 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-20	141	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-20	141	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.77E-17	147	198	No hit	No description
Pfam	PF00010	2.4E-13	148	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-18	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGDMYHFDKN LSSQDEISLF LRQILLRSSP PSSSSSSRPM PTVSCTSNVA HQNVNAHPSF 60 TASQLQDGKI LALDSTASFA SGSAACSSFK GQGASAANVS SSSAGVSENE NDDYDCESEE 120 GVEALAEEVP TKAASSRSSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA 180 SMLDEAIEYL KQLQLQVQML SMRNGLSLHP MCFPDGLQPL QLSQMGMELS ERNRSTPLNM 240 SATLPLHQDN NPLHYASNQP CVPYPPYINN PETSFGLEPR IQPDTKPLQH KEGSSEPIRG 300 KDILQYQQSS AIHSDTNTLG GSQVVKEFDS GTTLSFPFDT QACEPKDNNS LQPCIGGRDH 360 SGVMIRNSET NIIGR

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGDMYHFDKN LSSQDEISLF LRQILLRSSP PSSSSSSRPM PTVSCTSNVA HQNVNAHPSF  60
TASQLQDGKI LALDSTASFA SGSAACSSFK GQGASAANVS SSSAGVSENE NDDYDCESEE  120
GVEALAEEVP TKAASSRSSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA  180
SMLDEAIEYL KQLQLQVQML SMRNGLSLHP MCFPDGLQPL QLSQMGMELS ERNRSTPLNM  240
SATLPLHQDN NPLHYASNQP CVPYPPYINN PETSFGLEPR IQPDTKPLQH KEGSSEPIRG  300
KDILQYQQSS AIHSDTNTLG GSQVVKEFDS GTTLSFPFDT QACEPKDNNS LQPCIGGRDH  360
SGVMIRNSET NIIGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269\|PubMed:10225997, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN36240.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269\|PubMed:11245574}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031117	0.0	KT031117.1 Glycine max clone HN_CCL_124 bHLH transcription factor (Glyma11g05810.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028243675.1	0.0	transcription factor SPATULA-like isoform X1
Swissprot	Q9FUA4	4e-51	SPT_ARATH; Transcription factor SPATULA
TrEMBL	A0A445M5A5	0.0	A0A445M5A5_GLYSO; Transcription factor SPATULA
STRING	GLYMA01G39451.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2276	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-40	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Moubayidin L,Ostergaard L Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development. Curr. Biol., 2014. 24(22): p. 2743-8 [PMID:25455035] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Zumajo-Cardona C,Ambrose BA,Pabón-Mora N Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae). Evodevo, 2017. 8: p. 5 [PMID:28331573] Reyes-Olalde JI, et al. The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium. PLoS Genet., 2017. 13(4): p. e1006726 [PMID:28388635] Wu M, et al. SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis. Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385 [PMID:29966653]