PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36110.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 319aa    MW: 35762.8 Da    PI: 8.4035
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36110.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.75.8e-33106161359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  ++rY+eCl+NhAas+G+h+vDGCgEfm+s geegt+++l+CaAC+CHR+FHR+eve 
   KHN36110.1 106 SIRYRECLRNHAASMGSHVVDGCGEFMAS-GEEGTPESLRCAACECHRSFHRKEVEG 161
                  689*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.6E-30107159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-29108159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-21108161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.188109158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.9E-27244313IPR009057Homeodomain-like
SuperFamilySSF466896.98E-17247311IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-25253310IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAMRGQQDKE IEIPTTTTTT LGYNLLPNRD SSSSSSKLSS PTVGERSSSD HDHQTHTLIF  60
NETPHHNLYP PPPSLAPPQP QRPTLDPDLS TPIAPTSNPP RTSTPSIRYR ECLRNHAASM  120
GSHVVDGCGE FMASGEEGTP ESLRCAACEC HRSFHRKEVE GELQPQSLPQ QHVPNYHSYY  180
TNKHNGHFHY PTPSSSSLHH RLVATTTATP SLVPPVMMAF GGPAESSSED LINNTGAQLS  240
VQQQAPLTHS SNKKRFRTKF SQHQKDRMME FADKIDWKIQ KHNEQEVQHF CSQVGVKRQV  300
FKVWMHNNKQ TSSSKKQQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-202543141878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958110.0BT095811.1 Soybean clone JCVI-FLGm-19N6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242219.10.0zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW77e-63ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A445M4Q60.0A0A445M4Q6_GLYSO; Zinc-finger homeodomain protein 6
STRINGGLYMA01G37993.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-62homeobox protein 24
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]