PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36052.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 189aa    MW: 20880.9 Da    PI: 7.6781
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36052.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07433534
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                 C+ +e+  ++ fC  ++  lC+ C ++ H
  KHN36052.1  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                7**************************998 PP
2zf-B_box30.85.9e-105291237
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  KHN36052.1 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 91
                5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000212.32E-6345No hitNo description
PfamPF006437.7E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578459.61E-64886No hitNo description
SMARTSM003362.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1585196IPR000315B-box-type zinc finger
PfamPF006439.5E-85290IPR000315B-box-type zinc finger
CDDcd000212.96E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKSSH AENPASQPLE  120
PGEAKRGQNP LPKLKMGEKQ QNHKMPMVPT PGPDADGHAK MESKMIDLNM KPNRIHEQAS  180
NNQVRVHEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954480.0BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA.
GenBankBT0987720.0BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517191.11e-135B-box zinc finger protein 18
RefseqXP_028241683.11e-135B-box zinc finger protein 18-like
SwissprotC0SVM51e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A445M4681e-138A0A445M468_GLYSO; B-box zinc finger protein 19 isoform A
STRINGGLYMA01G37370.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-76DBB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]