PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35854.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 544aa    MW: 61469.5 Da    PI: 8.4799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35854.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-11358402554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h + ErrRR+++N+ f+ Lr llP+      +K +Ka+iL  A e ++sL
  KHN35854.1 358 HMISERRRREKLNENFQSLRALLPPG-----TKKDKASILIAAKETLSSL 402
                 8899********************97.....8***********9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.751353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14353417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-9355406No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13357417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8358402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MHPMESVFSL SVAARADFIQ FLVQSFGCSY ICLWAYDSIS PNRLSFLDGI YNLRNNQSSS  60
SLGSVQAQQL FSQFRTLTFD INDDRVPGLA FRNQRSYLEL QQLELLRLAS TEIQTQFFQE  120
ARIKTAVFMG CNKGEIELGF LNMSQVDIQT TLRSLFPEDF STRVLSQQID QNPPASSSSS  180
LRSISTGSPE YSSLLFSIPG TSQPHFSPET LGASSSSRLV PPMQPVPNSP HQQAINNIQA  240
LAQVPSLTQF PTPETEHDAI MRAILYVISP TTSHHHHNQQ HQQNLPYSSN NSLPVVHPDA  300
SAFQRYRQDL GSNNMVSNIL RRQSLMKRSF VFFRNLNFMR MRDRIQATSR PTNTQLHHMI  360
SERRRREKLN ENFQSLRALL PPGTKKDKAS ILIAAKETLS SLMAEVDKLS KRNQGLTSFL  420
SAKESTTEET KVASLSPNKR LSVIISHVPE SSSSEERMVE LQVNVRGQVS QTDLLIRLLE  480
FLKLAHHVSL VSMDANTHVA EGNNALHQLS FRLRIIQGSE WDESSFEEAV RRVVADLLQY  540
QMDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361366ERRRRE
2362367RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-100AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180164.10.0putative transcription factor bHLH041
TrEMBLA0A445IXM40.0A0A445IXM4_GLYSO; Putative transcription factor bHLH041 isoform B
STRINGGLYMA09G07391.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-61bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]