PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35816.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 244aa    MW: 27883.9 Da    PI: 6.1648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35816.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-145497755
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                  Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A+eYI++L+
  KHN35816.1 54 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQHLH 97
                57*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.8374796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1848113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-1350101No hitNo description
Gene3DG3DSA:4.10.280.103.0E-1753112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-125496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENIGEEYKH YWETNMFLQT QELDSWGLDE ALSGYYDSSS PDGAASSAAS KNIVSERNRR  60
KKLNERLFAL RSVVPNISKM DKASIIKDAI EYIQHLHEQE KIIQAEIMEL ESGMPRKSPS  120
YGFEQEQLPV VLRSKKKRTE QLYDSVTSRN TPIEVLELRV TYMGEKTVVV SLTCSKRTDT  180
MVKLCEVFES LKLKIITANI TSFSGRLLKT VFIEANEEEK DHLQIKIQTA IKALNNDPLS  240
PMSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35816.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966900.0BT096690.1 Soybean clone JCVI-FLGm-21E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239951.10.0transcription factor bHLH35-like
RefseqXP_028181009.10.0transcription factor bHLH35-like
SwissprotQ2HIV96e-93BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A445IXU31e-180A0A445IXU3_GLYSO; Transcription factor bHLH35 isoform A
TrEMBLC6TGE01e-180C6TGE0_SOYBN; BHLH transcription factor
STRINGGLYMA09G06770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-86bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]