PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35691.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 297aa    MW: 32626.4 Da    PI: 8.7232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35691.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.3e-16129175455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  KHN35691.1 129 FHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 175
                 5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-20122185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-20122185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.765125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-18128179No hitNo description
PfamPF000101.6E-13129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGDIGRALP PPDSEEFSTL FNQLLHNSPP LGMDPNHSPS DFTPHNTTIN INSNNNNNTV  60
PSSPSNFNFS DPHHYIPASD ATTFKQHNIN HNNNHTPDFT SSHVEKSVEA SKPVPPPRSS  120
SKRSRAAEFH NLSEKRRRSR INEKMKALQN LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM  180
LMMRNGLSLH PMSLPGGLRP MIMPQTGLNL DGSNGFQNST CAIASSSNDE SLVRHAFSFP  240
KQCSISNKSI GVPSVKNIAT SDTSSTFHPS IKDALYGNMP QPFMDTTKIG KPSPDVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477273e-98BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595974.10.0transcription factor ALC isoform X1
RefseqXP_028199949.10.0transcription factor ALC-like isoform X1
TrEMBLA0A0B2RMD10.0A0A0B2RMD1_GLYSO; Transcription factor SPATULA
TrEMBLK7M5M60.0K7M5M6_SOYBN; Uncharacterized protein
STRINGGLYMA14G09231.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-27bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]