PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN35612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | YABBY | ||||||||
Protein Properties | Length: 216aa MW: 24026.3 Da PI: 8.1575 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 244.3 | 2.3e-75 | 13 | 180 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvss 98 ++ s s+q+Cyv+CnfC+t+lavsvP tslfk vtvrCGhCt+llsvn++ a + hl++++ + l+ee +++ + ++++ + ++ + KHN35612.1 13 QHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKNVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHTFFTPqnLMEEIRNAP--STNIMMNQLPNPNDLVM 109 68899*****************************************9999999888889999999876623444444443..33444444444444444 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ + ee+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl KHN35612.1 110 STM-RGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 180 443.6678999***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.8E-72 | 17 | 180 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.06E-8 | 121 | 173 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-4 | 129 | 172 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSSSSTSFSP DQQHLSPSDQ LCYVHCNFCD TVLAVSVPCT SLFKNVTVRC GHCTNLLSVN 60 MRGLLLPSAN QLHLGHTFFT PQNLMEEIRN APSTNIMMNQ LPNPNDLVMS TMRGGPEETP 120 KPPSANRPPE KRQRVPSAYN RFIKDEIQRI KAGNPDISHR EAFSAAAKNW AHFPHIHFGL 180 MPDNQPVKKA NVRQEAEDVL MKDGFFAPAN VGVSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN35612.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098301 | 0.0 | BT098301.1 Soybean clone JCVI-FLGm-12E18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344723.1 | 1e-162 | protein YABBY 5 | ||||
Refseq | XP_028224235.1 | 1e-162 | axial regulator YABBY 1-like | ||||
Swissprot | O22152 | 2e-96 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A0B2RUX4 | 1e-160 | A0A0B2RUX4_GLYSO; Axial regulator YABBY 1 | ||||
TrEMBL | I1JKS4 | 1e-160 | I1JKS4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G03500.1 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 5e-98 | YABBY family protein |