PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN35482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25203.9 Da PI: 10.0375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.8e-13 | 21 | 72 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ KHN35482.1 21 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 72 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.02E-12 | 19 | 76 | No hit | No description |
PROSITE profile | PS50888 | 15.459 | 20 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-17 | 20 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 20 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 21 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-10 | 26 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 5.34E-5 | 148 | 219 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 5.6E-4 | 150 | 216 | No hit | No description |
PROSITE profile | PS51671 | 8.581 | 150 | 226 | IPR002912 | ACT domain |
CDD | cd04873 | 0.005 | 151 | 215 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MGRRKRRRTK SAKNKEEIEN QRMTHIAVER NRRKQMNEYL AVLRSLMPPS YVQRGDQASI 60 IGGAINFVKE LEQLLQCMKG QKRTKEGGFS DSSPFAEFFM FPQYSTRATQ SSSSSSKGYP 120 GTCEANNNIA RNHSWAVADI EVTLVDGHAN MKILSKKRPG LLLKMVVGLQ SLGLSILHLN 180 VTTVDDMVLT SVSVKVEEGC QLNTVDEIAA AVHQLSRTVQ EEAVFS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 7 | RKRRR |
2 | 3 | 8 | RKRRRT |
3 | 21 | 32 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN35482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 4e-57 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544814.1 | 1e-167 | transcription factor bHLH96 | ||||
Refseq | XP_028198704.1 | 1e-167 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 1e-85 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A0B2RUJ1 | 1e-168 | A0A0B2RUJ1_GLYSO; Transcription factor bHLH96 | ||||
STRING | GLYMA14G35560.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72210.1 | 8e-87 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|