PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35360.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 295aa    MW: 33402.2 Da    PI: 4.6797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35360.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18102150355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +GVr+++ +grW+AeIrdp++   r r++lg+++taeeAa  +++a+ +++g
  KHN35360.1 102 LRGVRQRP-WGRWAAEIRDPVK---RIRVWLGTYDTAEEAAMVYDKAAIAFRG 150
                 69******.**********755...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381236.8E-392248IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.19E-32100157No hitNo description
SMARTSM003802.0E-34101164IPR001471AP2/ERF domain
PROSITE profilePS5103222.945101158IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20102157IPR016177DNA-binding domain
PRINTSPR003672.2E-9102113IPR001471AP2/ERF domain
PfamPF008471.1E-11102150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28103158IPR001471AP2/ERF domain
PRINTSPR003672.2E-9124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEARFSEQKV VTYKHVKPGD ILNAAPKVVR ISVMDPYATD DEDEDEGLVI HPRMKKFVNE  60
IRIVEKKSST NCESAGVNRT SNVSLRQHYK GKTGDSLEKK RLRGVRQRPW GRWAAEIRDP  120
VKRIRVWLGT YDTAEEAAMV YDKAAIAFRG SKALTNFIKP PTREDLCDCG PNETEASVAV  180
SGENDSSEES HLSSPTSVLG LQSVELMLEE VSETDLPSKE ESSSQDSFLF LDSHSSSIDC  240
YFNFETLPPV FLHETSITQQ PDFHDKFSDI SHLVNEDFQS WNWDIDSYFS DPLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22100157159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-48AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028223724.10.0ethylene-responsive transcription factor CRF6-like
TrEMBLA0A0B2RQK30.0A0A0B2RQK3_GLYSO; Ethylene-responsive transcription factor CRF4
STRINGGLYMA03G41640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-38cytokinin response factor 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]