PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35329.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Whirly
Protein Properties Length: 141aa    MW: 15832.9 Da    PI: 6.5085
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35329.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly142.81.4e-44110135137
      Whirly  35 llelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefav 133
                 ++ ++ +++erkydW+k+q+falsatev++l+ + +++sc+ffhdp++ +sn+G+vrk+l+++P+++  G+fv+l+v n+l++++++fsvPv+ aefav
  KHN35329.1   1 MMSFMHSIGERKYDWDKRQKFALSATEVGSLITMDAQDSCDFFHDPSMLSSNAGQVRKSLSIKPHAN--GYFVSLTVVNNLLNTKDYFSVPVTTAEFAV 97 
                 899**************************************************************97..69**************************** PP

      Whirly 134 lrsl 137
                 ++++
  KHN35329.1  98 MKTA 101
                 **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085361.2E-411100IPR013742Plant transcription factor
SuperFamilySSF544471.8E-431120IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.101.7E-501120IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MMSFMHSIGE RKYDWDKRQK FALSATEVGS LITMDAQDSC DFFHDPSMLS SNAGQVRKSL  60
SIKPHANGYF VSLTVVNNLL NTKDYFSVPV TTAEFAVMKT ACTFALPHIM GWDQITNQQS  120
RGIDGLQAKG DSKVSELEWE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-62111850169StWhy2
3n1i_A2e-62111850169protein StWhy2
3n1j_A2e-62111850169Protein StWhy2
3n1k_A2e-62111850169protein StWhy2
3n1l_A2e-62111850169protein StWhy2
3r9y_A2e-62111850169Why2 protein
3r9z_A2e-62111850169Why2 protein
3ra0_A2e-62111850169Why2 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0921460.0BT092146.1 Soybean clone JCVI-FLGm-10O7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341889.11e-103single-stranded DNA-bindig protein WHY2-like protein
RefseqXP_028226778.11e-103single-stranded DNA-binding protein WHY2, mitochondrial-like
SwissprotD9J0344e-65WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0B2RSX11e-103A0A0B2RSX1_GLYSO; Uncharacterized protein
TrEMBLI1JRU01e-102I1JRU0_SOYBN; Uncharacterized protein
STRINGGLYMA03G41270.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-64WHIRLY 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]