PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35213.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 154aa    MW: 17504 Da    PI: 6.7879
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35213.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.51.1e-20250149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i nk   qvtfsk r+g++KKA+EL +LC+++ avi+fs+++++y +
  KHN35213.1  2 KTIANKCSLQVTFSKHRTGVFKKASELATLCGVDLAVIMFSPNNHVYSF 50
                6799*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.58E-22170IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-18153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.988154IPR002100Transcription factor, MADS-box
PfamPF003193.8E-22450IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-81631IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-83152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MKTIANKCSL QVTFSKHRTG VFKKASELAT LCGVDLAVIM FSPNNHVYSF GSPNVDSVIQ  60
RYTTEGPPPL FTQDLNEAPC TMDEGELQAH LNCLSNQIDA EKQRVEDLNH LLMAAKDHIW  120
WDVPIESMSN AQLEKYHKML KEIKLKHMRH THGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575989.11e-115agamous-like MADS-box protein AGL62
RefseqXP_028188651.11e-115agamous-like MADS-box protein AGL62
TrEMBLK7K9891e-113K7K989_SOYBN; Uncharacterized protein
STRINGGLYMA02G30990.21e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3509722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-32AGAMOUS-like 62