PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN35168.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CPP | ||||||||
Protein Properties | Length: 777aa MW: 85167.6 Da PI: 6.8949 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51 | 2.9e-16 | 488 | 525 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk KHN35168.1 488 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 525 89**********************************96 PP | |||||||
2 | TCR | 50.6 | 3.9e-16 | 572 | 610 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN KHN35168.1 572 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 610 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.3E-18 | 486 | 527 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.11 | 487 | 612 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-11 | 489 | 524 | IPR005172 | CRC domain |
SMART | SM01114 | 4.4E-17 | 572 | 613 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-11 | 574 | 610 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MDTPERNQIT ATLSMFEDSP VFNYINSLSP IKPVKSVPIS QTFNSLSFSS PPSVFTSPHV 60 SCLKESRFLR RHNPLGTSKP KVSSEDVIKV HSSEETLADT TRAHHNSSKL QEENTGKGIS 120 LRDASLELSR EHIRFSDELP KALKYNCGSP GYDHPPCGDE ANSLLELPGE AAENVGYVQE 180 GCKTDSVEGE VHLQEICQME PKSEGPDCYW DSLIPDAPDM LIFNSPGEAE AFKGLMHKPL 240 DSSIRLSKFM SMLPHSTINN GRKMHIVDSV ASGSAHEIED NHSEPMTATG TSQTQDNLAD 300 VALVTSNSNE KANDQLVSVT HRTIRRRCLD FEMANVQRKN SDDNSNIGFS TSESDERNVA 360 NEKQLLPAKR NGNLQRGILQ GIGLHLNALA ALKEYNGTQV EKLSSGRQLS LPSSTSLQIT 420 TSQEHQHLSL VPVSSERELD PSDIGVHPAE DCSQPSAYMA GEDFNQNSPR MKRQVKRKSE 480 TPGDTEGCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCQD CFNKPIHEDT VLQTRKQIES 540 RNPLAFAPKV IRNSDSVPEI GDDPNKTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSI 600 SCRCEGCKNA FGRKDGSAPV GIETDPEETE ASDKGMVEKT LQKTEIQNTE NHPDSATVST 660 PLRLSRPLLP LPFSSKGKPP RSFVTTISGS ALFANQKLGK PNPLWSQAKH FQTVPDEEMP 720 DILRGDSSPI TCIKTSSPNG KRISSPNCDL GLSPSRRGGR KLILQSIPSF PSLTPHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-17 | 491 | 609 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-17 | 491 | 609 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN35168.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537578.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_028191488.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A445HV79 | 0.0 | A0A445HV79_GLYSO; Protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | K7LMD8 | 0.0 | K7LMD8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G00920.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-140 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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