PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN35137.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 948aa MW: 104013 Da PI: 4.5449 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4e-10 | 795 | 839 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W+++E el+++av+++G++ ++ I +t+ +t+ q+k+++ k KHN35137.1 795 RGKWSKQETELFYEAVREMGTD-FSVIQKTFFPDKTRHQIKLKYKK 839 89********************.*******9889**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 8.3E-22 | 788 | 857 | No hit | No description |
PROSITE profile | PS50090 | 6.26 | 790 | 841 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.4E-8 | 794 | 843 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-8 | 795 | 839 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-10 | 796 | 844 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.44E-7 | 797 | 839 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 948 aa Download sequence Send to blast |
MDPFDDILPT APAARTRLGA KFIPKAKSKQ FPRKGIPASE HSTSSKDGIS GNECQNAVAS 60 ALSMPAEEPK GSVHHTQVEI PNSEDSTNRK QVSVKGDSAA LVDDSTITAT EVDADQKSMN 120 FLKPICEVTE GDPVYFEGAS VTSFVPETNL NNGTTQPVHP ANAVENEFNV AAPSATCSAI 180 DRMKEQPKIG EGSFLDSNKL IDNSIQVGTD LGFQGSSDDK IAIIQSNFDS KSNFGKKQEG 240 VSAEFELDPF SNILPYPGAG NVHKFKPKIK PRPRVSNVPA IASDSSNVMM EKSVELPTSC 300 TNDFQFFQSC GDGSGGLNQS ASLPLPTSEI LRTTELPDKF DDTSSSILSE DNKSLAAAIP 360 SQLDSLNAML SEDAVHNGTT DWPSSFGKSS REAADIFSGL ESLDDFLTQA ATGTGKPALH 420 SFNGKGGEEN FVTPAPSSIN SFGECDTTQV QRCPEYHTPQ DSLTFNEAAV FNEDDIHTSN 480 RRLETEEIVD LNPACPGDDV IDYQSMKSGE DPTLGIPVHE ELTNAADSPT LADFLHADVT 540 REKEDSNKRK KDGSTSCSLR KNRRCIAGEE DKGAKTSRQL RKQAARKPAN SSLNEDVEDN 600 NDLDPSYNSN GDELQENDDE YEVDYPSRKR RVSNSSQKKP VAKSGKTSQK PKKANDDLEK 660 TEEPPKKFSH STRRRKRCVD KALLEIPEDE LDRLNIPIKD IILLEEHRER LAKKEAMTSN 720 TSSTNQSGGD SLHEAGSYNE GAYDDGAYDD GAYNDEEFLG SEDGRDPYDN QANEGITSTS 780 VLLNYQSFRE KKTPRGKWSK QETELFYEAV REMGTDFSVI QKTFFPDKTR HQIKLKYKKE 840 ERQQPLQLTD AVNNSAKDHP HSKLFIELLK LASTKAEEYP GRDASDLVMA EEVVDLTAGT 900 HEEVPKAATK KEDADVKAQE DSVAVPSPEQ SDDSDDDFQK WSQYKCGY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN35137.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-106 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028191523.1 | 0.0 | uncharacterized protein LOC114377281 isoform X3 | ||||
TrEMBL | A0A445HVC4 | 0.0 | A0A445HVC4_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA11G01285.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 3e-33 | MYB_related family protein |
Publications ? help Back to Top | |||
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