PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN35100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19402.4 Da PI: 5.0279 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.3e-16 | 16 | 63 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 + kGVr++k +g+Wv+eIr+p g + r +lg++ t+e Aa a++ a +l KHN35100.1 16 KLKGVRRRK-WGKWVSEIRVP---G-TqERLWLGTYATPEAAAVAHDVAVYCL 63 679***998.**********8...3.35********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-16 | 16 | 75 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-9 | 16 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-24 | 16 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.28E-14 | 16 | 77 | No hit | No description |
PROSITE profile | PS51032 | 20.732 | 16 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 17 | 28 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-24 | 18 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSRSSAMHGI TSTNNKLKGV RRRKWGKWVS EIRVPGTQER LWLGTYATPE AAAVAHDVAV 60 YCLSRPSSLD KLNFPETLSS YSVQLRDMSP RSVQKVASDV GMDVDARNIV AGKTSTVGAE 120 TNCESDERTS TASVCNVVGE GGADHSDVFW WDDDGGSWHG SGGDSTERDA LSISIEDYL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 23 | KGVRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN35100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-86 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538667.2 | 1e-129 | ethylene-responsive transcription factor ERF020 | ||||
Refseq | XP_028189672.1 | 1e-129 | ethylene-responsive transcription factor ERF020-like | ||||
TrEMBL | A0A0R0HKL0 | 1e-128 | A0A0R0HKL0_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HVL4 | 1e-128 | A0A445HVL4_GLYSO; Ethylene-responsive transcription factor ERF020 | ||||
STRING | GLYMA11G01700.1 | 1e-129 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 5e-42 | ERF family protein |
Publications ? help Back to Top | |||
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