PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35072.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 284aa    MW: 31473.5 Da    PI: 10.1453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35072.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19136186256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  KHN35072.1 136 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 186
                 59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.72E-17135195No hitNo description
SMARTSM003801.0E-35136199IPR001471AP2/ERF domain
PROSITE profilePS5103223.301136193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-31136194IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22136193IPR016177DNA-binding domain
PfamPF008472.6E-13137186IPR001471AP2/ERF domain
PRINTSPR003673.3E-10137148IPR001471AP2/ERF domain
PRINTSPR003673.3E-10159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEGMRDTKSQ LEIQDQEGTN IGSSLSKLIL ASGSGTNTLD SIFSNCPQTT NGSTSSNSVL  60
DDLEPFRSSG CESLGSSVYL RQRDILQKFY QESRGNGNNN GSYNIPRSLA NTSINSVCRS  120
SSLSCYSLTK PCKKKLYRGV RQRHWGKWVA EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA  180
YKLRGEYARL NFPNLKDPTK LGFGDSARLN ALKSSVDAKI QAICQKVKRE RAKKNAAKKL  240
HNSTDPKRGQ SEKPSSSSSP EDQLLFLLFV IAVAAVVATF DFLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20135193160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2284610.0FJ228461.1 Glycine max AP2 domain-containing transcription factor 9 (AP2-9) mRNA, complete cds.
GenBankKT0310850.0KT031085.1 Glycine max clone HN_CCL_149 AP2-EREBP transcription factor (Glyma11g02050.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304391.21e-155AP2-EREBP transcription factor
RefseqXP_028188602.11e-155ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-57ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A445HVN31e-153A0A445HVN3_GLYSO; Ethylene-responsive transcription factor ERF061
TrEMBLI1LG951e-153I1LG95_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA11G02050.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-51ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]