PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34935.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 288aa    MW: 31837.6 Da    PI: 8.3388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34935.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C+++Fs+   L  H++ H
  KHN34935.1  4 HKCKLCSRTFSNGRALGGHMKAH 26
                79******************998 PP
2zf-C2H212.60.0004194216123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC+ Cgk+F+++  L  H + +
  KHN34935.1 194 HKCQSCGKTFRSSRALGGHRSIC 216
                 79***********9998888765 PP
3zf-C2H212.50.00045226248123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C+k+F +   L  H r+H
  KHN34935.1 226 FQCPFCSKVFGSGQALGGHKRSH 248
                 89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.37E-5329No hitNo description
PfamPF139128.9E-8327IPR007087Zinc finger, C2H2
SMARTSM003550.024426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.104.0E-4176237IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576672.12E-8194248No hitNo description
SMARTSM0035567194214IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-5194213IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974194223IPR007087Zinc finger, C2H2
PfamPF139124.8E-11225248IPR007087Zinc finger, C2H2
SMARTSM003550.013226248IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076226253IPR007087Zinc finger, C2H2
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MERHKCKLCS RTFSNGRALG GHMKAHLATL PLPPKPPLSP SAASFSSNSS SEEATHDEKS  60
LIYGLRENPK KCFRLADPEF NMASVVQDRE SETESKNPTR RRSERTRRTV NSELKKAKLS  120
FMESPEPVSS VSDTSPEEDV AMCLMMLSRD RWSKNNNNNI IIINNVVSND DVVEEEEEGG  180
RSVEIKLRRV RGKHKCQSCG KTFRSSRALG GHRSICEGSG NDSKTFQCPF CSKVFGSGQA  240
LGGHKRSHLM PSSSSTANND SFRLKESFID LNLPAPAEDD DLSVVSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34935.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671231e-168KC967123.1 Glycine max C2H2-type zinc finger protein 1 (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538738.10.0zinc finger protein ZAT9
RefseqXP_028189155.10.0zinc finger protein ZAT9-like
TrEMBLA0A445HX200.0A0A445HX20_GLYSO; Zinc finger protein ZAT9
TrEMBLI1LGQ40.0I1LGQ4_SOYBN; Uncharacterized protein
STRINGGLYMA11G03600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-37C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]