PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34916.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 209aa    MW: 23358.3 Da    PI: 6.8119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34916.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-184392255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr +k +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  KHN34916.1 43 TYRGVRMRK-WGKWVSEIREPKK---KSRIWLGSFSTPEMAARAHDVAALTIKG 92
                69*****99.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-3143101IPR001471AP2/ERF domain
SMARTSM003802.7E-3743106IPR001471AP2/ERF domain
PfamPF008476.6E-124392IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2143101IPR016177DNA-binding domain
PROSITE profilePS5103222.82743100IPR001471AP2/ERF domain
CDDcd000181.19E-3244102No hitNo description
PRINTSPR003676.2E-104455IPR001471AP2/ERF domain
PRINTSPR003676.2E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEEEDNQVHN LTEEKKKSEN EEVSVESNDK KKKKRSSDGK HPTYRGVRMR KWGKWVSEIR  60
EPKKKSRIWL GSFSTPEMAA RAHDVAALTI KGTSAFLNFP ELASHLPRPL TTSPKDIQAA  120
AAKAAALNFE AQVEAQAQAQ LSIPSSSSEV EFPDLLLDSS HSAGEFDYSA PWLVAEAEHL  180
DLAFRLDDMT LLSLLGGLTK FRKNNLYSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1735100672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11434KKKSENEEVSVESNDKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34916.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-77AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538748.11e-135dehydration-responsive element-binding protein 3
RefseqXP_028187101.11e-135dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445HWL01e-133A0A445HWL0_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLI1LGS41e-133I1LGS4_SOYBN; Uncharacterized protein
STRINGGLYMA11G03790.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.11e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]