PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN34827.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

CAMTA

Protein Properties

Length: 980aa MW: 109131 Da PI: 5.3758

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN34827.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.6	3.3e-55	13	129	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 ++e ++rwlk+ e++ iL+n+ek+++t+e++++p+sgsl+L+n++++r+frkDG++w+kk+dg+tv E+he+LKv +ve+l+cyYa++e+np fqrr+y KHN34827.1 13 HQEaQARWLKPAEVMYILQNHEKFQFTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVLNVEALNCYYARGEQNPAFQRRSY 111 677799******************************************************************************************* PP CG-1 100 wlLeeelekivlvhylev 117 w+L+ ++++ivlvhy+++ KHN34827.1 112 WMLDPAYDHIVLVHYRNT 129 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.03	9	135	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.5E-73	12	130	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.7E-47	15	128	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.8E-9	422	510	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.09E-17	424	508	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.5E-7	424	507	IPR002909	IPT domain
CDD	cd00102	2.09E-4	424	509	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.7E-16	619	714	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.539	620	712	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.79E-17	622	714	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.14E-14	625	712	No hit	No description
Pfam	PF12796	5.9E-8	636	714	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.06	653	685	IPR002110	Ankyrin repeat
SMART	SM00248	0.0038	653	682	IPR002110	Ankyrin repeat
SMART	SM00248	2200	692	721	IPR002110	Ankyrin repeat
SMART	SM00015	83	770	792	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.51	772	800	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.19E-6	810	868	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	2.2	821	843	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.876	822	851	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.021	824	842	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.6E-5	844	866	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.34	845	870	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.2E-5	846	866	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MTPGYEYDIN DLHQEAQARW LKPAEVMYIL QNHEKFQFTQ EPPQQPTSGS LFLFNKRVLR 60 FFRKDGHNWR KKRDGRTVGE AHERLKVLNV EALNCYYARG EQNPAFQRRS YWMLDPAYDH 120 IVLVHYRNTS EGKLSSGAGA QLSPSSSSVY TQSPSPYSTQ NPGSTSILGD SYEPNQSFSS 180 PGSTEVTSDM FVLNNKMGHM DGTDTESGTS PELEVTQALR RLEVQLSLNE DNFEDIVSFG 240 SKHETTHDSN PQHDQRVISN QEQSAAFSGP DDQGLFYDGY NGRQGDGGEF YHELIDHGYP 300 DGNEKALWTE VLESCKSSSA VKLPQKNVYM PVENLENSVS SARRVPVSNQ ENSHWLNFNS 360 NNSENSVFSQ PQGVDEVKFP VYSSMVETQV INSDYYETLF DQSQIGAPPD ANSSLTVAQK 420 QKFTIKTISP EWGYATETTK VIVVGSLLCH PSDSAWACMF GDVEVPVEII QDGVISCEAP 480 SHLPGKVTLC ITSGNRESCS EVREFEYRDK TNSCTQCTQS ETEATRSPEE LLLLVRLEQM 540 LLSASTIKND NIESGIPLIK QKADDDSWSH IIEALLVGSG TSTGTVDWLL EELLKDKLQQ 600 WLSCRSQEKD EETGCSLSKK EQGIIHMVAG LGFEWALNPI LTCGVNINFR DINGWTALHW 660 AARFGREKMV ASLIASGASA GAVTDPNAQD PTGKTAASIA AGNGHKGLAG YLSEIAVTSH 720 LSSLTLEESE LSKSSAELQA DMTVNSVSKE NLTASEDQAS LKDTLAAIRN VTQAAARIQS 780 AFRSHSFRKR RAREVAASAG GIGTISEISA MSKLAFRNSR EYNSAALSIQ KKYRGWKGRK 840 DFLALRKKVV KIQAHVRGYQ VRKHYKVIWA VGILDKVVLR WRRKGAGLRG FRQEMDINEN 900 ENEDEDILKV FRKQKVDVEI EEAVSRVLSM VDSPDAREQY HRMLEKYRQA KAELAGTSDE 960 ASLSTSVGDD LFIDDFYPFP

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MTPGYEYDIN DLHQEAQARW LKPAEVMYIL QNHEKFQFTQ EPPQQPTSGS LFLFNKRVLR  60
FFRKDGHNWR KKRDGRTVGE AHERLKVLNV EALNCYYARG EQNPAFQRRS YWMLDPAYDH  120
IVLVHYRNTS EGKLSSGAGA QLSPSSSSVY TQSPSPYSTQ NPGSTSILGD SYEPNQSFSS  180
PGSTEVTSDM FVLNNKMGHM DGTDTESGTS PELEVTQALR RLEVQLSLNE DNFEDIVSFG  240
SKHETTHDSN PQHDQRVISN QEQSAAFSGP DDQGLFYDGY NGRQGDGGEF YHELIDHGYP  300
DGNEKALWTE VLESCKSSSA VKLPQKNVYM PVENLENSVS SARRVPVSNQ ENSHWLNFNS  360
NNSENSVFSQ PQGVDEVKFP VYSSMVETQV INSDYYETLF DQSQIGAPPD ANSSLTVAQK  420
QKFTIKTISP EWGYATETTK VIVVGSLLCH PSDSAWACMF GDVEVPVEII QDGVISCEAP  480
SHLPGKVTLC ITSGNRESCS EVREFEYRDK TNSCTQCTQS ETEATRSPEE LLLLVRLEQM  540
LLSASTIKND NIESGIPLIK QKADDDSWSH IIEALLVGSG TSTGTVDWLL EELLKDKLQQ  600
WLSCRSQEKD EETGCSLSKK EQGIIHMVAG LGFEWALNPI LTCGVNINFR DINGWTALHW  660
AARFGREKMV ASLIASGASA GAVTDPNAQD PTGKTAASIA AGNGHKGLAG YLSEIAVTSH  720
LSSLTLEESE LSKSSAELQA DMTVNSVSKE NLTASEDQAS LKDTLAAIRN VTQAAARIQS  780
AFRSHSFRKR RAREVAASAG GIGTISEISA MSKLAFRNSR EYNSAALSIQ KKYRGWKGRK  840
DFLALRKKVV KIQAHVRGYQ VRKHYKVIWA VGILDKVVLR WRRKGAGLRG FRQEMDINEN  900
ENEDEDILKV FRKQKVDVEI EEAVSRVLSM VDSPDAREQY HRMLEKYRQA KAELAGTSDE  960
ASLSTSVGDD LFIDDFYPFP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN34827.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096537	0.0	BT096537.1 Soybean clone JCVI-FLGm-10A15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006580123.1	0.0	calmodulin-binding transcription activator 4 isoform X3
Refseq	XP_028232710.1	0.0	calmodulin-binding transcription activator 4-like isoform X3
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0B2RSQ6	0.0	A0A0B2RSQ6_GLYSO; Calmodulin-binding transcription activator 4
STRING	GLYMA05G28090.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]