PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34778.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 755aa    MW: 88864.2 Da    PI: 7.962
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34778.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.86.7e-22116207290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 
                 fY++YA++ GFsvrk +  k+  ng + +r+f C +eg+++ +  +  ke+r+r++tr++Cka l+++++k      ++w+vtk++ eHnH l 
  KHN34778.1 116 FYKRYAYQHGFSVRKGRFIKR--NGIMRRRDFFCHREGRSSLKIIEPLKEQRNRESTRCECKAYLRISLQKshdifPSEWRVTKFVVEHNHVLL 207
                 9***************87776..9*9******************999*********************99865555579************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-19116207IPR004330FAR1 DNA binding domain
PfamPF105519.8E-28329420IPR018289MULE transposase domain
PROSITE profilePS509669.916597640IPR007527Zinc finger, SWIM-type
PfamPF044345.5E-7608639IPR007527Zinc finger, SWIM-type
SMARTSM005757.7E-4615642IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MSTINNTMGE GSTSTRDMST DKINVDLNEY PIEDISLENG YSGTVSEHFD HDIVANDVLE  60
VEEIETYEKE NIVSSSQNIE INEFAEEVDR DETYNETNIV PFVGQIFLSE EEAFAFYKRY  120
AYQHGFSVRK GRFIKRNGIM RRRDFFCHRE GRSSLKIIEP LKEQRNREST RCECKAYLRI  180
SLQKSHDIFP SEWRVTKFVV EHNHVLLTQS EVRFLPANRT ISEDDIERIF LLKEGGLSVR  240
QLMRVIELEK NVKHGYLPFI ERDIRNLFVK TKKKVERNDA KDLLKYCEDA KKSCSKFQYA  300
YTLDEERRLE HIFWSPASCS DWYQKYGDVV VFDTTYKVNS YEMPFGIFVG MNSHGKTVLF  360
GCALLRNETI SAFRWLMKTF ISLMKKPPKT ILTDQDPWMK EAISKDLPST KHSFCIWHIT  420
FKFSSWFNAI LRDKYSKWCS DFYELYKLET CEEFEHQWPK VVAKYNLQSN KHVKGLYEIR  480
NYWALAYLRD HFFGGMTTTG RSESINAFIK RFINSHTSLS DFTKQVDVAI DDIKQKEDHD  540
IMLEKCKRIN LKLMSPLQEQ AHGVLTRFAF QKFQEEFERS TQYSIHHENG NEFVLRYYKD  600
ANSRKHMVFW DGKIATCSCK YFEFWGILCR HILSIFLHKD CHEIPSNYLP SRWRLQTSHD  660
DDEVDPQQVN VVFEEQVDVV HCPPPSKTKG RPKRRRLKGG KELSHNMNTC GLCKDVGHNI  720
VTCPLKENTQ FSGHTNKKKK ICKDANLNPI LLPKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1692696KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5336950.0EF533695.1 Glycine max clone BAC GM_WBb098N15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028201028.10.0protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A0B2RR750.0A0A0B2RR75_GLYSO; Protein FAR1-RELATED SEQUENCE 11
STRINGAES623830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-174FAR1-related sequence 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]