PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34631.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 378aa    MW: 41716.5 Da    PI: 8.3764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34631.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-18108153147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ede+l+++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
       KHN34631.1 108 RGHWRPAEDERLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 153
                      899*****************************.***********996 PP
2Myb_DNA-binding55.71.1e-17160203146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
       KHN34631.1 160 RRSFSEEEEERLITAHRMYGNK-WAMIARLFP-GRTDNAVKNHWHV 203
                      6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.96103154IPR017930Myb domain
SMARTSM007178.0E-15107156IPR001005SANT/Myb domain
PfamPF002491.2E-16108153IPR001005SANT/Myb domain
SuperFamilySSF466892.36E-28108201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-26109161IPR009057Homeodomain-like
CDDcd001677.15E-14111152No hitNo description
PROSITE profilePS5129426.867155209IPR017930Myb domain
SMARTSM007173.3E-15159207IPR001005SANT/Myb domain
PfamPF002491.4E-14160202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-20162207IPR009057Homeodomain-like
CDDcd001671.28E-7171202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSSSQHLNNV GEGSNRDMSF FPPSSLYVGS SQTPPLSMGH ENGVEGSKPE MGLQIFGSTV  60
FQPSECRGTK RASDEEGVEI ENRNLCLKLA DEAQAKSSAS GKIKLCARGH WRPAEDERLK  120
ELVAQYGPQN WNLIAENLEG RSGKSCRLRW FNQLDPRINR RSFSEEEEER LITAHRMYGN  180
KWAMIARLFP GRTDNAVKNH WHVIMARRQR EHSSSVYRRR KLVVNETLPK GLDLTLSNNA  240
GSESTISSTI DESASTCTNL SLTPSSAKVT PPFRRLFDHP GPSQNHQAFG SLIGQARGDV  300
SFNKFCGASW KGVAYKKADQ VGKLKGVDQS NFSDANSEVS VSESVATNRS NVSISEESET  360
VGDKINMPFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-331082084104C-Myb DNA-Binding Domain
1msf_C3e-331082084104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34631.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311830.0KT031183.1 Glycine max clone HN_CCL_37 MYB/HD-like transcription factor (Glyma03g00980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553355.10.0transcription factor CSA
RefseqXP_028216213.10.0transcription factor CSA-like
SwissprotQ5NBM82e-72CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A445FFD50.0A0A445FFD5_GLYSO; Transcription factor CSA isoform A
TrEMBLI1N8F40.0I1N8F4_SOYBN; Uncharacterized protein
STRINGGLYMA19G29670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.12e-66myb domain protein 117
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  7. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  8. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  9. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]