PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34514.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 178aa    MW: 20350.6 Da    PI: 8.9968
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34514.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1721.4e-221399188
        FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
                +fYn+YA+ +GF+v+k+  +ksk  g++++++f+Cskeg+++++k++  + +++++e+r gC  ++ v+++++gk++vt++e +HnH+
  KHN34514.1 13 RFYNKYARLLGFNVTKDWINKSKVYGKVVCSKFTCSKEGYHSKDKRD-ANVKKHSKEKRSGCLPHMIVTRQSHGKYQVTHFEAQHNHD 99
                5*******************************************999.999999*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-191399IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
IGMEFESDDD AYRFYNKYAR LLGFNVTKDW INKSKVYGKV VCSKFTCSKE GYHSKDKRDA  60
NVKKHSKEKR SGCLPHMIVT RQSHGKYQVT HFEAQHNHDN INSNSNSAKM LNLQNEFSVA  120
EAVEADSNNS LGPTKSKSAP HVLNKKTSAH ESLDLLYINY DNYLHYARER DLKEGEAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34514.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239376.14e-86protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_020239386.17e-87protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLA0A0B2RQE71e-130A0A0B2RQE7_GLYSO; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
STRINGGLYMA10G38320.13e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-18FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]