PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN34446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 171aa MW: 19507.4 Da PI: 7.0977 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.3e-12 | 1 | 43 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L KHN34446.1 1 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 43 58*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.288 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-11 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-15 | 1 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.26E-4 | 1 | 47 | No hit | No description |
Pfam | PF00010 | 1.2E-9 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-14 | 1 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 5.42E-4 | 93 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERIGKL QEEEMEEGTN 60 RINLLGISKE LKPNEVMVRN SPKFDVERRD QDTRISICCA TKPGLLLSTV NTLEALGLEI 120 HQCVISSFND FSIQASCSEV AEQRNCMSQE EIKQALFRNA GYGEASVQNV P |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 9 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN34446.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT094423 | 0.0 | BT094423.1 Soybean clone JCVI-FLGm-18L15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028248313.1 | 1e-113 | transcription factor bHLH93-like isoform X1 | ||||
Swissprot | Q9LSL1 | 3e-77 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | I1L4V5 | 1e-112 | I1L4V5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G33590.1 | 1e-113 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-79 | beta HLH protein 93 |
Publications ? help Back to Top | |||
---|---|---|---|
|