PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN34158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20572.9 Da PI: 6.5149 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+e r+p g ++r++lg+f t+e+Aa+a++ a++ ++g KHN34158.1 18 AYRGVRKRK-WGKWVSETREP---GTKTRIWLGSFETPEMAAAAYDVAALHFRG 67 69****999.*******8887...435***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-22 | 17 | 76 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.68E-22 | 17 | 77 | No hit | No description |
Pfam | PF00847 | 1.9E-11 | 18 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 18 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-35 | 18 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.288 | 18 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MDMPSSSSSH VVGAASSAYR GVRKRKWGKW VSETREPGTK TRIWLGSFET PEMAAAAYDV 60 AALHFRGRDA RLNFPELAST LPRPVSNNAD HIRMAAHQAA LRLRTNPAAP DTAGSAGSSS 120 SAPLTVRLSP TQIQAINDSP MDSPQTWMQM PDTFMMHDQS MMFASNGYSF EDNEWEHMQN 180 DSLWDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-15 | 14 | 75 | 1 | 63 | ATERF1 |
3gcc_A | 6e-15 | 14 | 75 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN34158.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573841.1 | 1e-135 | ethylene-responsive transcription factor ERF021 | ||||
Refseq | XP_028179986.1 | 1e-135 | ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I2 | 3e-63 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A0B2RPI3 | 1e-134 | A0A0B2RPI3_GLYSO; Ethylene-responsive transcription factor ERF021 | ||||
STRING | GLYMA01G44140.1 | 1e-123 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-60 | ERF family protein |
Publications ? help Back to Top | |||
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