PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34110.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 777aa    MW: 84877.1 Da    PI: 6.5868
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34110.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR512.9e-16488525340
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  KHN34110.1 488 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 525
                 89**********************************96 PP
2TCR50.63.9e-16572610139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  KHN34110.1 572 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 610
                 589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-18486527IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.11487612IPR005172CRC domain
PfamPF036381.1E-11489524IPR005172CRC domain
SMARTSM011144.4E-17572613IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11574610IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MDTPERNQIT STLSKFEDSP VFNYINSLSP IKPVKSVPIS QTFNSLSFSS PPSVFTSPHV  60
SCLKESRFLR RHNPLGTSKP KVPSEDVIKV HSSEETLADS TRAHHNSSKL EEENTGKGIS  120
VRDASIELSR EHIKFSDELP QALKYNCGSP GFDPPPCGDE ANSLLELPGE AATDVGYVQE  180
GCKTDSVEVE VRLQEVCQME PKSEGPDCYW DSLIPDALDM LIFNSPGDAE AFKGLMHKPL  240
ASSIRLNEFM SMLPHSTINN GRKMHIVDSD ASGSAPEIED HCSELMTATG TNQTQDNFAN  300
VALVTSNSNE KANDQLVSAT HRTIRRRCLD FEMANVQRKN SDENSNTGSS TSESDERNVA  360
NEKQLLPAKR NGDLQRGILQ GIGLHLNALA ALKEYKGIQI EKLSSGRQLS LPSSTSLQIS  420
TSQEHQNLSL VPVSSERELD PSDNGVQPAE DCSQPSAYMA GEDFNQNSPK KKRQVKRKSE  480
TPGETEGCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCQD CFNKPIHEDT VLQTRKQIES  540
RNPLAFAPKV IRNSDSVPEI GDDPNKTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSI  600
SCRCEGCKNA FGRKDGSASV GIETDPEETE ATDKGVTEKA LQKTEIQNTE DHPDSATVAT  660
PLRLSRPLLP LPFSSKGKPP RSFVTTISGS ALFASQKLGK PNPLWSQAKH FQTVPDEEIP  720
DILQGDSSPI TCIKTSSPNG KRISSPNCDL GSSPSRRGGR RLILQSIPSF PSLTPHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1749160914120Protein lin-54 homolog
5fd3_B3e-1749160914120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180593.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0B2RLP00.0A0A0B2RLP0_GLYSO; Protein lin-54 like
STRINGGLYMA01G44670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-134TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]