PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34075.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 285aa    MW: 31157.1 Da    PI: 4.131
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34075.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.92.3e-20582379
         NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79
                +G+rFhPt  elvv++Lk+kv +kk+    +i+e+diyk+ Pw Lp k +++++e ewyfF++ +kky +g++ + atk
  KHN34075.1  5 VGVRFHPTGVELVVYFLKRKVMAKKICD-GFIAELDIYKYAPWGLPdKsCLRTGELEWYFFCPLEKKYGSGSKMKLATK 82
                7************************877.89**************96447778888**************999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.213152IPR003441NAC domain
SuperFamilySSF1019413.27E-234108IPR003441NAC domain
PfamPF023651.6E-8572IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAKAVGVRFH PTGVELVVYF LKRKVMAKKI CDGFIAELDI YKYAPWGLPD KSCLRTGELE  60
WYFFCPLEKK YGSGSKMKLA TKIRLEDKDL ADKGIAQDSY VVCKVFQKEG LGPRKGAHCA  120
RPFNEEEWDD EEIGIPCAAL TAPVPILPMT SDGSVPNDNL PASGCTGSAS ISCLSGSLPS  180
PGTVNPTGPN DQAANDNDIL PMLDIFNDDK WFEEVYNPGQ ENIVEGASPS DDFFEGLEDY  240
LADYWAALAG FSAGQNTGDI GNSDNLDFIE LNDLDTPLFY PITQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-146761886Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34075.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531450.11e-170NAC domain-containing protein 82 isoform X1
RefseqXP_028243981.11e-170NAC domain-containing protein 82-like isoform X1
TrEMBLA0A0B2RLK10.0A0A0B2RLK1_GLYSO; NAC domain-containing protein 78
STRINGGLYMA05G32470.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-46NAC domain containing protein 82
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]