PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN34068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 29389.1 Da PI: 5.9385 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.2e-08 | 139 | 179 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L KHN34068.1 139 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 179 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.951 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-14 | 135 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-12 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-11 | 136 | 184 | No hit | No description |
SMART | SM00353 | 1.3E-12 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-6 | 140 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
METNTSAFTN VNSTWNLEKM ETNEQQNDEH NIILQVQDPM GSGIWPSNNY HNLLQMHQTP 60 NTTTLSIIAP PPSSSGFLGD ILGVHNLEED EEPEEELGAM KEMMYKIAAM QPVDIAPATI 120 RKPKRRNVRI SDDPQSVAAR HRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK 180 RQIRLLQSIP QSSNPPQCIG VATTSHHAST LLLAPSCDWP FAPNVLPSST AATASMDMSA 240 GLGFDVGHAH ACDGSSSFNH HEVISE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN34068.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524301.1 | 0.0 | transcription factor HEC3-like | ||||
Refseq | XP_028233281.1 | 0.0 | transcription factor HEC3-like | ||||
TrEMBL | A0A0B2RPA4 | 0.0 | A0A0B2RPA4_GLYSO; Transcription factor HEC3 | ||||
STRING | GLYMA05G32410.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 5e-47 | bHLH family protein |
Publications ? help Back to Top | |||
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