PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34067.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 465aa    MW: 52946.7 Da    PI: 9.2538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34067.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-07138159426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + Cr+f + G C++G+rC+F H 
  KHN34067.1 138 PYCRDFVA-GKCRRGNRCRFLHH 159
                 67******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.605134161IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-4135160IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4138159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5140160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878189216IPR000571Zinc finger, CCCH-type
SMARTSM003560.013190215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSESGRNTSS SEWNLRDEPE FASYGVASSN SSKWSNLKRN DELKPTMGFS CEEPVSGRKG  60
SNKDDIANTN YGVWDATNAQ DTDGSYNMQI SPGLDEDYKN KCNQSLKDGC SKLFRSRSRS  120
PPRSFRWDSG RVGGLTQPYC RDFVAGKCRR GNRCRFLHHD DQNYGNSWEN RHIYSAPNEN  180
NNYSRTIGRS YNRTCFHYAQ GRCKMGASCK YVHHDNFDRR RTESCLEQGV QHGTNQNRLH  240
GESTFSSDIK KSNWTAKNDS ANVHTSQTVG ADIWLDNEKM SPPNWIYDVR SSIHINQEQG  300
QSKQQVAPGQ VLHQNVSKTF IKPEPVVRFP KQRDPTCNSR EQKNVNATGG VSLAYFPNRQ  360
LVKNEHPVQL KGIHTFKFSL VEFVKELLNP TWKDGKITKE DYKAIVKKVT DKVIDTVQGA  420
HIPQTQEKID CYLSSSKSKL NKLVQVSGGS PTNFHHMYEE FQILS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028231007.10.0uncharacterized protein LOC114411560
TrEMBLA0A0B2RQH10.0A0A0B2RQH1_GLYSO; Zinc finger CCCH domain-containing protein 38
STRINGGLYMA05G32395.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3538322
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]