PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34033.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 345aa    MW: 38335.2 Da    PI: 7.0503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34033.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20165214255
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae+Aa+a+++a ++++g
  KHN34033.1 165 KYRGVRQRP-WGKWAAEIRDpF-----KaTRVWLGTFETAEDAARAYDQASLRFRG 214
                 8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-33164223IPR001471AP2/ERF domain
CDDcd000186.01E-34165224No hitNo description
SuperFamilySSF541719.81E-23165223IPR016177DNA-binding domain
PROSITE profilePS5103225.014165222IPR001471AP2/ERF domain
SMARTSM003802.6E-35165228IPR001471AP2/ERF domain
PfamPF008471.8E-13165214IPR001471AP2/ERF domain
PRINTSPR003674.3E-12166177IPR001471AP2/ERF domain
PRINTSPR003674.3E-12188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MKNNRDKEKG NDVDQSYRQH HTLSMPMMFS GLNREKEMSA MISALTHVVC GEDEHHGADY  60
SLLNHNINNT NSAVVGDDDF TVTSNMASGS MPPSSTCSSQ GGNSVLKRRR EYDNTNDFSR  120
GGSFPAISTI AESSSTVTRR TANTVYDYEY RTENVKVVEE EPRRKYRGVR QRPWGKWAAE  180
IRDPFKATRV WLGTFETAED AARAYDQASL RFRGNKAKLN FPENVRLRQQ QEPPLNLNPP  240
PPNHGAILSI PSTTVHTEAL QGSLGSSNFY EHSYSHLHEF PVSLYDQIAE STSTTMASHH  300
LQFLPPASSS TMTMTSPQAP PSIYPTHPAA WSSGYSYNSS SSASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24164225163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956911e-165BT095691.1 Soybean clone JCVI-FLGm-25E4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631268.10.0ethylene-responsive transcription factor ABR1
RefseqXP_028233244.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0B2RP720.0A0A0B2RP72_GLYSO; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0R0JXR90.0A0A0R0JXR9_SOYBN; Uncharacterized protein
STRINGGLYMA05G32040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-33ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]